diff --git a/protocols/CoverageCalculations_gvcf.sh b/protocols/CoverageCalculations_gvcf.sh
index e56c8bc5..1ef1cc6a 100755
--- a/protocols/CoverageCalculations_gvcf.sh
+++ b/protocols/CoverageCalculations_gvcf.sh
@@ -125,7 +125,7 @@ then
 			
 			grep -v "NC_001422.1" "${intermediateDir}/${externalSampleID}.${perBase}.coveragePerBase.txt" > "${intermediateDir}/${externalSampleID}.${perBase}.coveragePerBase.txt.tmp"
 			echo "phiX is removed for ${externalSampleID}.${perBase} perBase" 
-			mv -v "${intermediateDir}/${externalSampleID}.${perBase}.coveragePerBase.txt.tmp" "${projectResultsDir}/coverage/CoveragePerBase/${Gender,,}/${externalSampleID}.${perBase}.coveragePerBase.txt"
+			awk '{if (NR>1){printf "%s\t%s\t%s\t%s\t%.0f\t%s\t%s\n",$1,$2,$3,$4,$5,$6,$7}else {print $0}}' "${intermediateDir}/${externalSampleID}.${perBase}.coveragePerBase.txt.tmp" > "${projectResultsDir}/coverage/CoveragePerBase/${Gender,,}/${externalSampleID}.${perBase}.coveragePerBase.txt"
 			
 			echo "coveragePerTarget file can be found here: ${projectResultsDir}/coverage/CoveragePerBase/${Gender,,}/${externalSampleID}.${perBase}.coveragePerBase.txt"
 			
diff --git a/protocols/processDragenTrendanalysis.sh b/protocols/ProcessDragenTrendAnalysis.sh
similarity index 100%
rename from protocols/processDragenTrendanalysis.sh
rename to protocols/ProcessDragenTrendAnalysis.sh
diff --git a/test/results/PlatinumSample_NA12878.NGS_DNA_Test_v1.coveragePerBase.selection_True.txt b/test/results/PlatinumSample_NA12878.NGS_DNA_Test_v1.coveragePerBase.selection_True.txt
index f2eb6aeb..d615b866 100644
--- a/test/results/PlatinumSample_NA12878.NGS_DNA_Test_v1.coveragePerBase.selection_True.txt
+++ b/test/results/PlatinumSample_NA12878.NGS_DNA_Test_v1.coveragePerBase.selection_True.txt
@@ -1,100 +1,100 @@
 Index	Chr	Chr Position Start	Description	Min Counts	CDS	Contig
-1	2	197550	AC079779.7	33.0	CDS	1
-2	2	197551	AC079779.7	33.0	CDS	1
-3	2	197552	AC079779.7	33.0	CDS	1
-4	2	197553	AC079779.7	33.0	CDS	1
-5	2	197554	AC079779.7	33.0	CDS	1
-6	2	197555	AC079779.7	33.0	CDS	1
-7	2	197556	AC079779.7	33.0	CDS	1
-8	2	197557	AC079779.7	33.0	CDS	1
-9	2	197558	AC079779.7	33.0	CDS	1
-10	2	197559	AC079779.7	33.0	CDS	1
-11	2	197560	AC079779.7	33.0	CDS	1
-12	2	197561	AC079779.7	33.0	CDS	1
-13	2	197562	AC079779.7	33.0	CDS	1
-14	2	197563	AC079779.7	33.0	CDS	1
-15	2	197564	AC079779.7	36.0	CDS	1
-16	2	197565	AC079779.7	36.0	CDS	1
-17	2	197566	AC079779.7	36.0	CDS	1
-18	2	197567	AC079779.7	36.0	CDS	1
-19	2	197568	AC079779.7	31.0	CDS	1
-20	2	197569	AC079779.7	31.0	CDS	1
-21	2	197570	AC079779.7	31.0	CDS	1
-22	2	197571	AC079779.7	31.0	CDS	1
-23	2	197572	AC079779.7	31.0	CDS	1
-24	2	197573	AC079779.7	31.0	CDS	1
-25	2	197574	AC079779.7	31.0	CDS	1
-26	2	197575	AC079779.7	31.0	CDS	1
-27	2	197576	AC079779.7	31.0	CDS	1
-28	2	197577	AC079779.7	31.0	CDS	1
-29	2	197578	AC079779.7	31.0	CDS	1
-30	2	197579	AC079779.7	31.0	CDS	1
-31	2	197580	AC079779.7	31.0	CDS	1
-32	2	197581	AC079779.7	31.0	CDS	1
-33	2	197582	AC079779.7	31.0	CDS	1
-34	2	197583	AC079779.7	31.0	CDS	1
-35	2	197584	AC079779.7	28.0	CDS	1
-36	2	197585	AC079779.7	28.0	CDS	1
-37	2	197586	AC079779.7	28.0	CDS	1
-38	2	197587	AC079779.7	28.0	CDS	1
-39	2	197588	AC079779.7	28.0	CDS	1
-40	2	197589	AC079779.7	28.0	CDS	1
-41	2	197590	AC079779.7	28.0	CDS	1
-42	2	197591	AC079779.7	28.0	CDS	1
-43	2	197592	AC079779.7	28.0	CDS	1
-44	2	197593	AC079779.7	27.0	CDS	1
-45	2	197594	AC079779.7	26.0	CDS	1
-46	2	197595	AC079779.7	26.0	CDS	1
-47	2	197596	AC079779.7	26.0	CDS	1
-48	2	197597	AC079779.7	25.0	CDS	1
-49	2	197598	AC079779.7	25.0	CDS	1
-52329	Y	2803782	ZFY	0.0	CDS	1
-52330	Y	2803783	ZFY	0.0	CDS	1
-52331	Y	2803784	ZFY	0.0	CDS	1
-52332	Y	2803785	ZFY	0.0	CDS	1
-52333	Y	2803786	ZFY	0.0	CDS	1
-52334	Y	2803787	ZFY	0.0	CDS	1
-52335	Y	2803788	ZFY	0.0	CDS	1
-52336	Y	2803789	ZFY	0.0	CDS	1
-52337	Y	2803790	ZFY	0.0	CDS	1
-52338	Y	2803791	ZFY	0.0	CDS	1
-52339	Y	2803792	ZFY	0.0	CDS	1
-52340	Y	2803793	ZFY	0.0	CDS	1
-52341	Y	2803794	ZFY	0.0	CDS	1
-52342	Y	2803795	ZFY	0.0	CDS	1
-52343	Y	2803796	ZFY	0.0	CDS	1
-52344	Y	2803797	ZFY	0.0	CDS	1
-52345	Y	2803798	ZFY	0.0	CDS	1
-52346	Y	2803799	ZFY	0.0	CDS	1
-52347	Y	2803800	ZFY	0.0	CDS	1
-52348	Y	2803801	ZFY	0.0	CDS	1
-52349	Y	2803802	ZFY	0.0	CDS	1
-52350	Y	2803803	ZFY	0.0	CDS	1
-52351	Y	2803804	ZFY	0.0	CDS	1
-52352	Y	2803805	ZFY	0.0	CDS	1
-52353	Y	2803806	ZFY	0.0	CDS	1
-52354	Y	2803807	ZFY	0.0	CDS	1
-52355	Y	2803808	ZFY	0.0	CDS	1
-52356	Y	2803809	ZFY	0.0	CDS	1
-52357	Y	2803810	ZFY	0.0	CDS	1
-52358	Y	2803811	ZFY	0.0	CDS	1
-52359	Y	2803812	ZFY	0.0	CDS	1
-52360	Y	2803813	ZFY	0.0	CDS	1
-52361	Y	2803814	ZFY	0.0	CDS	1
-52362	Y	2803815	ZFY	0.0	CDS	1
-52363	Y	2803816	ZFY	0.0	CDS	1
-52364	Y	2803817	ZFY	0.0	CDS	1
-52365	Y	2803818	ZFY	0.0	CDS	1
-52366	Y	2803819	ZFY	0.0	CDS	1
-52367	Y	2803820	ZFY	0.0	CDS	1
-52368	Y	2803821	ZFY	0.0	CDS	1
-52369	Y	2803822	ZFY	0.0	CDS	1
-52370	Y	2803823	ZFY	0.0	CDS	1
-52371	Y	2803824	ZFY	0.0	CDS	1
-52372	Y	2803825	ZFY	0.0	CDS	1
-52373	Y	2803826	ZFY	0.0	CDS	1
-52374	Y	2803827	ZFY	0.0	CDS	1
-52375	Y	2803828	ZFY	0.0	CDS	1
-52376	Y	2803829	ZFY	0.0	CDS	1
-52377	Y	2803830	ZFY	0.0	CDS	1
-52378	Y	2803831	ZFY	0.0	CDS	1
+1	2	197550	AC079779.7	33	CDS	1
+2	2	197551	AC079779.7	33	CDS	1
+3	2	197552	AC079779.7	33	CDS	1
+4	2	197553	AC079779.7	33	CDS	1
+5	2	197554	AC079779.7	33	CDS	1
+6	2	197555	AC079779.7	33	CDS	1
+7	2	197556	AC079779.7	33	CDS	1
+8	2	197557	AC079779.7	33	CDS	1
+9	2	197558	AC079779.7	33	CDS	1
+10	2	197559	AC079779.7	33	CDS	1
+11	2	197560	AC079779.7	33	CDS	1
+12	2	197561	AC079779.7	33	CDS	1
+13	2	197562	AC079779.7	33	CDS	1
+14	2	197563	AC079779.7	33	CDS	1
+15	2	197564	AC079779.7	36	CDS	1
+16	2	197565	AC079779.7	36	CDS	1
+17	2	197566	AC079779.7	36	CDS	1
+18	2	197567	AC079779.7	36	CDS	1
+19	2	197568	AC079779.7	31	CDS	1
+20	2	197569	AC079779.7	31	CDS	1
+21	2	197570	AC079779.7	31	CDS	1
+22	2	197571	AC079779.7	31	CDS	1
+23	2	197572	AC079779.7	31	CDS	1
+24	2	197573	AC079779.7	31	CDS	1
+25	2	197574	AC079779.7	31	CDS	1
+26	2	197575	AC079779.7	31	CDS	1
+27	2	197576	AC079779.7	31	CDS	1
+28	2	197577	AC079779.7	31	CDS	1
+29	2	197578	AC079779.7	31	CDS	1
+30	2	197579	AC079779.7	31	CDS	1
+31	2	197580	AC079779.7	31	CDS	1
+32	2	197581	AC079779.7	31	CDS	1
+33	2	197582	AC079779.7	31	CDS	1
+34	2	197583	AC079779.7	31	CDS	1
+35	2	197584	AC079779.7	28	CDS	1
+36	2	197585	AC079779.7	28	CDS	1
+37	2	197586	AC079779.7	28	CDS	1
+38	2	197587	AC079779.7	28	CDS	1
+39	2	197588	AC079779.7	28	CDS	1
+40	2	197589	AC079779.7	28	CDS	1
+41	2	197590	AC079779.7	28	CDS	1
+42	2	197591	AC079779.7	28	CDS	1
+43	2	197592	AC079779.7	28	CDS	1
+44	2	197593	AC079779.7	27	CDS	1
+45	2	197594	AC079779.7	26	CDS	1
+46	2	197595	AC079779.7	26	CDS	1
+47	2	197596	AC079779.7	26	CDS	1
+48	2	197597	AC079779.7	25	CDS	1
+49	2	197598	AC079779.7	25	CDS	1
+52329	Y	2803782	ZFY	0	CDS	1
+52330	Y	2803783	ZFY	0	CDS	1
+52331	Y	2803784	ZFY	0	CDS	1
+52332	Y	2803785	ZFY	0	CDS	1
+52333	Y	2803786	ZFY	0	CDS	1
+52334	Y	2803787	ZFY	0	CDS	1
+52335	Y	2803788	ZFY	0	CDS	1
+52336	Y	2803789	ZFY	0	CDS	1
+52337	Y	2803790	ZFY	0	CDS	1
+52338	Y	2803791	ZFY	0	CDS	1
+52339	Y	2803792	ZFY	0	CDS	1
+52340	Y	2803793	ZFY	0	CDS	1
+52341	Y	2803794	ZFY	0	CDS	1
+52342	Y	2803795	ZFY	0	CDS	1
+52343	Y	2803796	ZFY	0	CDS	1
+52344	Y	2803797	ZFY	0	CDS	1
+52345	Y	2803798	ZFY	0	CDS	1
+52346	Y	2803799	ZFY	0	CDS	1
+52347	Y	2803800	ZFY	0	CDS	1
+52348	Y	2803801	ZFY	0	CDS	1
+52349	Y	2803802	ZFY	0	CDS	1
+52350	Y	2803803	ZFY	0	CDS	1
+52351	Y	2803804	ZFY	0	CDS	1
+52352	Y	2803805	ZFY	0	CDS	1
+52353	Y	2803806	ZFY	0	CDS	1
+52354	Y	2803807	ZFY	0	CDS	1
+52355	Y	2803808	ZFY	0	CDS	1
+52356	Y	2803809	ZFY	0	CDS	1
+52357	Y	2803810	ZFY	0	CDS	1
+52358	Y	2803811	ZFY	0	CDS	1
+52359	Y	2803812	ZFY	0	CDS	1
+52360	Y	2803813	ZFY	0	CDS	1
+52361	Y	2803814	ZFY	0	CDS	1
+52362	Y	2803815	ZFY	0	CDS	1
+52363	Y	2803816	ZFY	0	CDS	1
+52364	Y	2803817	ZFY	0	CDS	1
+52365	Y	2803818	ZFY	0	CDS	1
+52366	Y	2803819	ZFY	0	CDS	1
+52367	Y	2803820	ZFY	0	CDS	1
+52368	Y	2803821	ZFY	0	CDS	1
+52369	Y	2803822	ZFY	0	CDS	1
+52370	Y	2803823	ZFY	0	CDS	1
+52371	Y	2803824	ZFY	0	CDS	1
+52372	Y	2803825	ZFY	0	CDS	1
+52373	Y	2803826	ZFY	0	CDS	1
+52374	Y	2803827	ZFY	0	CDS	1
+52375	Y	2803828	ZFY	0	CDS	1
+52376	Y	2803829	ZFY	0	CDS	1
+52377	Y	2803830	ZFY	0	CDS	1
+52378	Y	2803831	ZFY	0	CDS	1
diff --git a/workflow_DRAGEN.csv b/workflow_DRAGEN.csv
index 3d765e6d..bdcadb01 100644
--- a/workflow_DRAGEN.csv
+++ b/workflow_DRAGEN.csv
@@ -1,9 +1,9 @@
 step,protocol,dependencies
 s01_PrepareDragenData,protocols/PrepareDragenData.sh,
-s01b_processDragenTrendAnalysis,protocols/processDragenTrendAnalysis.sh,s01_PrepareDragenData
+s01b_ProcessDragenTrendAnalysis,protocols/ProcessDragenTrendAnalysis.sh,s01_PrepareDragenData
 s02_CoverageCalculations,protocols/CoverageCalculations_gvcf.sh,s01_PrepareDragenData;variantCalls=sampleDragenRawVariantCalls;merge=noMerge
 s03_AnnotateVcf,protocols/AnnotateVcf_perSample.sh,s01_PrepareDragenData;variantCalls=sampleDragenVariantCalls
 s04_SnpEff,protocols/SnpEff_perSample.sh,s03_AnnotateVcf
 s08_Gavin,protocols/Gavin.sh,s04_SnpEff;inputFile=sampleVariantCallsSnpEff_Annotated
 s09_ReheaderVcf,protocols/ReheaderVCF.sh,s08_Gavin
-s10_PipelineFinished,protocols/PipelineFinished.sh,s01b_processDragenTrendAnalysis;s02_CoverageCalculations;s09_ReheaderVcf
\ No newline at end of file
+s10_PipelineFinished,protocols/PipelineFinished.sh,s01b_ProcessDragenTrendAnalysis;s02_CoverageCalculations;s09_ReheaderVcf