From 1141bb1e3955c7d935b874a2255782b4ae2bc9fb Mon Sep 17 00:00:00 2001
From: Christian Sachs <c.sachs@fz-juelich.de>
Date: Fri, 6 Apr 2018 13:42:14 +0200
Subject: [PATCH] changed assertion failing on wrong rotations to a warning

---
 molyso/mm/image.py | 12 +++++++++++-
 1 file changed, 11 insertions(+), 1 deletion(-)

diff --git a/molyso/mm/image.py b/molyso/mm/image.py
index c5f036a..80d3a7a 100644
--- a/molyso/mm/image.py
+++ b/molyso/mm/image.py
@@ -7,6 +7,8 @@
 from __future__ import division, unicode_literals, print_function
 
 import math
+import warnings
+
 from ..generic.signal import fit_to_type
 from ..generic.rotation import find_rotation, apply_rotate_and_cleanup
 from ..generic.registration import translation_2x1d
@@ -125,7 +127,15 @@ def autorotate(self):
         self.image, self.angle, self.crop_height, self.crop_width = \
             apply_rotate_and_cleanup(self.image, self.angle)
 
-        assert self.image.size > 0
+        if self.image.size == 0:
+            warnings.warn(
+                "Autorotation failed. This likely means that the image is unsuitable for use with molyso.",
+                RuntimeWarning
+            )
+
+            self.image = self.original_image.copy()
+            self.angle = 0.0
+            self.crop_height = self.crop_width = 0
 
 
 # noinspection PyUnresolvedReferences