Confirm regex is still valid for non-enum selected envo terms

[mslarae13]

The Env Triad squad developed a small selection of terms for submitters to pick their env triad terms for soil, sediment, water and plant.

As part of enabling these enumerations in the submission portal we need to update the submission schema.
However, we should also ensure that the regular expression still works.
Submitters can discover envo terms outside of the provided enum & this is important in our learning what other terms should be included in the enums.

Criteria for completion

• Confirm and test that the regex is still valid in the submission schema & submission portal for all extension and all environmental triad terms (broad, local, medium)

[turbomam]

Check for patterns in the environmental triad slot_usages

print out the any_ofs first to get oriented

make squeaky-clean all test
yq '.classes | to_entries | map(select(.value.slot_usage.env_broad_scale)) | from_entries | .[].slot_usage.env_broad_scale.any_of' src/nmdc_submission_schema/schema/nmdc_submission_schema.yaml 
yq '.classes | to_entries | map(select(.value.slot_usage.env_broad_scale)) | from_entries | .[].slot_usage.env_broad_scale.pattern' src/nmdc_submission_schema/schema/nmdc_submission_schema.yaml 

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- range: EnvBroadScalePlantAssociatedEnum
- range: string
- range: EnvBroadScaleSedimentEnum
- range: string
- range: EnvBroadScaleSoilEnum
- range: string
null
- range: EnvBroadScaleWaterEnum
- range: string


^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$

[turbomam]

The same pattern is asserted on all of the env_local_scale and env_medium slot_usages too

@mslarae13 can you say more about what makes the regular expression in the pattern valid or not valid? These patterns will accept all of these, even though only the first one is a valid pairing of a OBO foundry label and id. See https://regexr.com/8bn75

• soil [ENVO:00001998]
• banana [ENVO:00001998]
• Jenny [ENVO:8675309]

It won't accept

• soil
• ENVO:00001998
• soil [ENVO_00001998]

[mslarae13]

That's correct. We currently have no additional validation for pairing and that just is what it is right now until the ontology squad we're kicking off can provide that validation or at least that check.