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pattern restriction on environmental factor #141

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aclum opened this issue Jul 20, 2023 · 2 comments
Open

pattern restriction on environmental factor #141

aclum opened this issue Jul 20, 2023 · 2 comments

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@aclum
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aclum commented Jul 20, 2023

In reviewing a recent submission from a user 'environmental factor' doesn't have a pattern match enforced. The text description says this should be formatted like time series design [EFO:EFO_0001779], however the submission validated with a value for environmental factor of 'antibiotic treatment'.

submission schema confirms range is currently no pattern defined for this slot, at least for the host associated interface.
https://microbiomedata.github.io/submission-schema/HostAssociatedInterface/

@mslarae13 to confirm that this should be considered a bug

@mslarae13
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yeah, we need stricter validation here. These should be ontology terms... I think we can make this a global validation across all packages. @pkalita-lbl

@mslarae13
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Relates to #189

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