Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking β€œSign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Website file tree contains broken links #175

Closed
github-actions bot opened this issue Jan 29, 2025 Β· 5 comments
Closed

Website file tree contains broken links #175

github-actions bot opened this issue Jan 29, 2025 Β· 5 comments
Assignees

Comments

@github-actions
Copy link

github-actions bot commented Jan 29, 2025 β€’

Summary

Status Count
πŸ” Total 828
βœ… Successful 685
⏳ Timeouts 0
πŸ”€ Redirected 0
πŸ‘» Excluded 28
❓ Unknown 0
🚫 Errors 115

Errors per input

Errors in _build/html/runtime-docs-as-html/howto-guides/jobs/gold-translation-etl/index.html

πŸ‘‰ This is a false positive. This web page is a rendered version of this Python notebook. The author of the notebook is instructing the reader to start up a server locally and then visit that localhost URL.

Errors in _build/html/home-docs-as-html/404.html

  • [ERROR] file:///howto_guides/portal_guide.html | Cannot find file
  • [ERROR] file:///_static/favicon.ico | Cannot find file
  • [ERROR] file:///explanation/community_conversations.html | Cannot find file
  • [ERROR] file:///_static/css/theme.css%3Fv=e59714d7 | Cannot find file
  • [ERROR] file:///runtime.html | Cannot find file
  • [ERROR] file:///reference/data_portal.html | Cannot find file
  • [ERROR] file:///tutorials/run_workflows.html | Cannot find file
  • [ERROR] file:///genindex.html | Cannot find file
  • [ERROR] file:///_static/pygments.css%3Fv=b86133f3 | Cannot find file
  • [ERROR] file:///explanation/fair_data.html | Cannot find file
  • [ERROR] file:///_static/css/custom.css%3Fv=d4ef3e3c | Cannot find file
  • [ERROR] file:///howto_guides/globus.html | Cannot find file
  • [ERROR] file:///index.html | Cannot find file
  • [ERROR] file:///search.html | Cannot find file
  • [ERROR] file:///_static/nmdc-logo-bg-white.png | Cannot find file
  • [ERROR] file:///howto_guides/data_plan.html | Cannot find file
  • [ERROR] file:///tutorials/submission_portal.html | Cannot find file
  • [ERROR] file:///howto_guides/submit2nmdc.html | Cannot find file
  • [ERROR] file:///howto_guides/api_gui.html | Cannot find file
  • [ERROR] file:///workflows.html | Cannot find file
  • [ERROR] file:///tutorials/nav_data_portal.html | Cannot find file
  • [ERROR] file:///howto_guides/run_workflows.html | Cannot find file

Errors in _build/html/runtime-docs-as-html/tutorials/json/index.html

Errors in _build/html/runtime-docs-as-html/nb/wf_automation/index.html

Errors in _build/html/runtime-docs-as-html/tutorials/metadata-in/index.html

Errors in _build/html/workflow-docs-as-html/chapters/12_Metabolomics/index.html

Errors in _build/html/runtime-docs-as-html/howto-guides/claim-and-run-jobs/index.html

Errors in _build/html/runtime-docs-as-html/howto-guides/author-changesheets/index.html

Errors in _build/html/runtime-docs-as-html/howto-guides/release-process/index.html

Errors in _build/html/workflow-docs-as-html/chapters/5_Metagenome_and_Metatranscriptome_Annotation/index.html

Errors in _build/html/home-docs-as-html/howto_guides/run_workflows.html

Errors in _build/html/workflow-docs-as-html/chapters/6_Metagenome_Assembled_Genome/index.html

Errors in _build/html/runtime-docs-as-html/404.html

  • [ERROR] file:///runtime/nb/api_access_via_python | Cannot find file
  • [ERROR] file:///runtime | Cannot find file
  • [ERROR] file:///runtime/howto-guides/improving-search-api | Cannot find file
  • [ERROR] file:///runtime/howto-guides/update-sensors-ops | Cannot find file
  • [ERROR] file:///runtime/admin | Cannot find file
  • [ERROR] file:///runtime/stylesheets/extra.css | Cannot find file
  • [ERROR] file:///runtime/assets/stylesheets/palette.06af60db.min.css | Cannot find file
  • [ERROR] file:///runtime/nb/get_data | Cannot find file
  • [ERROR] file:///runtime/tutorials/metadata-in | Cannot find file
  • [ERROR] file:///runtime/howto-guides/claim-and-run-jobs | Cannot find file
  • [ERROR] file:///runtime/nb/queue_and_trigger_data_jobs | Cannot find file
  • [ERROR] file:///runtime/howto-guides/jobs/gold-translation-etl | Cannot find file
  • [ERROR] file:///runtime/nb/wf_automation | Cannot find file
  • [ERROR] file:///runtime/howto-guides/release-process | Cannot find file
  • [ERROR] file:///runtime/assets/images/favicon.ico | Cannot find file
  • [ERROR] file:///runtime/assets/stylesheets/main.a40c8224.min.css | Cannot find file
  • [ERROR] file:///runtime/howto-guides/author-changesheets | Cannot find file
  • [ERROR] file:///runtime/explanation/journeys | Cannot find file
  • [ERROR] file:///runtime/tutorials/json | Cannot find file
  • [ERROR] file:///runtime/tutorials/translators | Cannot find file
  • [ERROR] file:///runtime/explanation/identifiers | Cannot find file
  • [ERROR] file:///runtime/contributing-docs | Cannot find file
  • [ERROR] file:///runtime/howto-guides/create-triggers | Cannot find file
  • [ERROR] file:///runtime/tutorials/exporters | Cannot find file
  • [ERROR] file:///runtime/tutorials/auth | Cannot find file

Errors in _build/html/home-docs-as-html/tutorials/run_workflows.html

Errors in _build/html/workflow-docs-as-html/chapters/1_Metagenome_Workflow_Overview/index.html

Errors in _build/html/runtime-docs-as-html/howto-guides/update-sensors-ops/index.html

Errors in _build/html/home-docs-as-html/genindex.html

Errors in _build/html/workflow-docs-as-html/chapters/14_Lipidomics/index.html

Errors in _build/html/workflow-docs-as-html/chapters/10_Metatranscriptome_Expression/index.html

Errors in _build/html/workflow-docs-as-html/chapters/2_Read_Based_Taxonomy/index.html

Errors in _build/html/workflow-docs-as-html/chapters/3_Metagenome_Reads_QC/index.html

Errors in _build/html/runtime-docs-as-html/admin/index.html

Errors in _build/html/workflow-docs-as-html/chapters/7_Metatranscriptome_Workflow_Overview/index.html

Errors in _build/html/workflow-docs-as-html/chapters/9_Metatranscriptome_Assembly/index.html

Errors in _build/html/workflow-docs-as-html/chapters/8_Metatranscriptome_Reads_QC/index.html

Errors in _build/html/workflow-docs-as-html/chapters/4_Metagenome_Assembly/index.html

@eecavanna
Copy link
Collaborator

eecavanna commented Jan 29, 2025 β€’

Some of these may be false positives (TBD).

@eecavanna
Copy link
Collaborator

Also, CFS is down this week, which may be affecting links to NERSC-hosted files.

@eecavanna
Copy link
Collaborator

The "Error 404" pages that are dynamically generated by some Sphinx plugin, contain some problematic links; for example:

[ERROR] file:///howto_guides/portal_guide.html | Cannot find file

@eecavanna
Copy link
Collaborator

eecavanna commented Jan 29, 2025 β€’

There are, indeed, some broken HTTP links in the list; for example:

[404] https://api.microbiomedata.org/nmdcschema/biosample_set/gold:Gb0115217 | Network error: Not Found

@eecavanna
Copy link
Collaborator

Replaced by #186

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant