From e0d7bf7ca6c16f9787fb26d9f13603bd4c693b89 Mon Sep 17 00:00:00 2001 From: "Paul J. McMurdie" Date: Mon, 30 Jun 2014 17:57:08 -0700 Subject: [PATCH] Update links to article in README --- README.html | 214 +++++++++++++++++----------------------------------- README.md | 10 +-- 2 files changed, 73 insertions(+), 151 deletions(-) diff --git a/README.html b/README.html index 542cc52a..7b7d2a56 100644 --- a/README.html +++ b/README.html @@ -1,178 +1,102 @@ - - - - - - -<a href="http://joey711.github.com/phyloseq/">phyloseq</a> - + + + + -code.r, code.cpp { - background-color: #F8F8F8; -} -table, td, th { - border: none; -} -blockquote { - color:#666666; - margin:0; - padding-left: 1em; - border-left: 0.5em #EEE solid; -} + -hr { - height: 0px; - border-bottom: none; - border-top-width: thin; - border-top-style: dotted; - border-top-color: #999999; -} + -@media print { - * { - background: transparent !important; - color: black !important; - filter:none !important; - -ms-filter: none !important; - } - - body { - font-size:12pt; - max-width:100%; - } - - a, a:visited { - text-decoration: underline; - } - - hr { - visibility: hidden; - page-break-before: always; - } - - pre, blockquote { - padding-right: 1em; - page-break-inside: avoid; - } - - tr, img { - page-break-inside: avoid; - } - - img { - max-width: 100% !important; - } - - @page :left { - margin: 15mm 20mm 15mm 10mm; - } - - @page :right { - margin: 15mm 10mm 15mm 20mm; - } - - p, h2, h3 { - orphans: 3; widows: 3; - } - - h2, h3 { - page-break-after: avoid; - } + +
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phyloseq

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Article on Improved Microbiome Analysis

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McMurdie and Holmes (2014) -Waste Not, Want Not: Why Rarefying Microbiome Data is Statistically Inadmissible -PLoS Computational Biology in press

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(2013) Presubmission versions ahead of acceptance: -PDF version 2, -PDF version 1

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McMurdie and Holmes (2014) Waste Not, Want Not: Why Rarefying Microbiome Data is Statistically Inadmissible PLoS Computational Biology 10(4): e1003531

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Presubmission versions ahead of acceptance (2013): PDF version 2, PDF version 1

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Latest peer-reviewed article about phyloseq

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phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data (2013) PLoS ONE 8(4):e61217

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Interface with microbio.me/qiime

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See the microbio_me_qiime tutorial for more details and examples downloading and importing into phyloseq/R directly from this public database.

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Other resources

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The phyloseq project also has a number of supporting online resources, most of which can by found at the phyloseq home page, or from the phyloseq stable release page on Bioconductor.

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To post feature requests or ask for help, try the phyloseq Issue Tracker.

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phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data

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(2013) PLoS ONE 8(4):e61217

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Interface with microbio.me/qiime

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See the microbio_me_qiime tutorial for more details and examples downloading and importing into phyloseq/R directly from this public database.

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To post feature requests or ask for help, try the phyloseq Issue Tracker.

+ + - - diff --git a/README.md b/README.md index 3f01c1d4..3d6d9fdf 100644 --- a/README.md +++ b/README.md @@ -5,18 +5,16 @@ ## Article on Improved Microbiome Analysis McMurdie and Holmes (2014) -[Waste Not, Want Not: Why Rarefying Microbiome Data is Statistically Inadmissible](http://arxiv.org/abs/1310.0424) -PLoS Computational Biology *in press* +[Waste Not, Want Not: Why Rarefying Microbiome Data is Statistically Inadmissible](http://dx.plos.org/10.1371/journal.pcbi.1003531) +PLoS Computational Biology 10(4): e1003531 -(2013) Presubmission versions ahead of acceptance: +Presubmission versions ahead of acceptance (2013): [PDF version 2](http://arxiv.org/pdf/1310.0424v2.pdf), [PDF version 1](http://arxiv.org/pdf/1310.0424v1.pdf) ## Latest peer-reviewed article about phyloseq -[phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data](http://dx.plos.org/10.1371/journal.pone.0061217) - -(2013) PLoS ONE 8(4):e61217 +[phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data](http://dx.plos.org/10.1371/journal.pone.0061217) (2013) PLoS ONE 8(4):e61217 ## Interface with microbio.me/qiime See the [microbio_me_qiime tutorial](http://joey711.github.io/phyloseq/download-microbio.me.html) for more details and examples downloading and importing into phyloseq/R directly from this public database.