diff --git a/inst/pages/training.qmd b/inst/pages/training.qmd index 702fdfb4..4cea0b04 100644 --- a/inst/pages/training.qmd +++ b/inst/pages/training.qmd @@ -12,8 +12,10 @@ The page provides practical information to support training and self-study. Brief checklist to prepare for training (see below for links). - Install the recommended software + - If the time allows, watch the short online videos and familiarize yourself with the other available material + - Join Gitter online chat for support ## Recommended software {#sec-software} @@ -32,21 +34,22 @@ information. RStudio is optional. - Install key R packages (Section [@sec-ecosystem] provides an installation script) -- After a successful installation you can consider trying out examples -from Section [@sec-exercises] already before training. **You can run -the workflows by simply copy-pasting examples.** You can then test -further examples from this tutorial, modifying and applying these -techniques to your own data. Plain source code for the individual chapters -of this book are available via -[Github](https://github.com/microbiome/OMA/tree/master/R) - -- If you have access to CSC notebook you can find instructions from -[here](https://microbiome.github.io/outreach/). +Once you've successfully installed the software, consider exploring examples +from Section [@sec-exercises] even before starting the training. Running the +workflows is easy — just copy and paste the examples. You can then try +additional examples from the book, adapting and applying the techniques to your +own data. Source code for each chapter is available on +[Github](https://github.com/microbiome/OMA). ## Study material {#sec-material} We encourage you to familiarize yourself with the material and test examples -in advance but this is optional: +in advance but this is optional. If you're new to this topic, the following +resources may be particularly helpful. + +- [Interactive R tutorials for beginners](https://rstudio.github.io/learnr/articles/examples.html) + +- [Introduction to R](https://noppe.2.rahtiapp.fi/main/catalog) (available in CSC Noppe, see [@sec-vm]) - [Introduction to data analysis with R and Bioconductor](https://carpentries-incubator.github.io/bioc-intro/) (for beginners with R) @@ -61,3 +64,19 @@ in advance but this is optional: - @sec-exercises for self-study - @sec-resources and links to complementary external material + +## Virtual machines and learning environments {#sec-vm} + +In most of the training courses, we use learning environments that have +necessary software installed. Check from course details, if this applied to the +course that you are participating. + +In most training courses, we use learning environments with the required software pre-installed. Please check the course details to see if this applies to your course. + +- CSC Noppe (formerly Notebooks) is available for users with accounts at Finnish +higher education institutions or state research institutes. For more +information, visit [this page](https://microbiome.github.io/outreach/). + +- [Bioconductor workshops](https://workshop.bioconductor.org/) are accessible +with a Bioconductor account, providing pre-installed Bioconductor software and +workshops.