JuliaBookmarks.md

Linear Algebra

Packages

• Intel MKL linear algebra library

• Padded matrices

• Gaius

• Tullio.jl. Example here.

Krylov methods

• https://github.com/SciML/ExponentialUtilities.jl

• Expokit.jl

• KrylovKit.jl

• FastExpm.jl

Analysis

Packages

• https://github.com/JuliaDiff/ForwardDiff.jl

• https://github.com/JuliaDiff/FiniteDiff.jl

• https://github.com/JuliaMath/Calculus.jl

• https://github.com/JuliaComputing/NonlinearSolve.jl

• https://github.com/SciML/Quadrature.jl

Fourier analysis

• FFTW.jl.

• https://github.com/bionanoimaging/FourierTools.jl

• https://github.com/Marco-Congedo/FourierAnalysis.jl

• https://github.com/JuliaArrays/FFTViews.jl

API

Packages

• https://github.com/jw3126/ArgCheck.jl

• https://simeonschaub.github.io/OptionalArgChecks.jl/dev/

• Unpack

• Parameters

• https://juliahub.com/ui/Packages/ArgTools/aGHFV/1.1.1

• https://github.com/JuliaAI/IterationControl.jl

Arrays

Packages

• ElasticArrays

• IdentityMatrix.jl

• https://github.com/mateuszbaran/HybridArrays.jl

• Block arrays

• RecursiveArrayTools

• LazyArrays.jl

• TriMatrices.jl -- Julia package for storing large triangular or symmetric matrices in non-redundant format.

• ThreadedSparseArrays.jl

Orgs

• https://github.com/JuliaArrays

Geometry, Interpolations

• https://github.com/JuliaGeometry/CoordinateTransformations.jl
• http://juliamath.github.io/Interpolations.jl/latest/
• https://github.com/sisl/GridInterpolations.jl/blob/master/src/GridInterpolations.jl

More on differentiation

• https://discourse.julialang.org/t/am-i-using-diffresults-jl-correctly/35894
• https://discourse.julialang.org/t/a-way-to-obtain-the-value-and-derivatives-with-forwarddiff/22862
• http://www.juliadiff.org/DiffResults.jl/latest/
• https://github.com/dpsanders/ReversePropagation.jl

Code introspection & Profiling

Packages

• Treeview.jl (view Julia syntax trees as a graph)

• Flatten.jl (type queries)

• ProfileVega.jl

• TimerOutputs.jl

• Traceur.jl

• OwnTime.jl

• Timeout.jl

• https://github.com/FluxML/IRTools.jl

• https://github.com/antoine-levitt/Exfiltrator.jl

• https://github.com/c42f/TerminalLoggers.jl

• https://github.com/oxinabox/LoggingExtras.jl

• https://github.com/timholy/MethodAnalysis.jl

Precompilation

• https://discourse.julialang.org/t/ann-snoopcompile-1-2-package-precompilation/33359

• jump-dev/JuMP.jl#2484

Structs, preallocation, dispatch

• https://github.com/oxinabox/AutoPreallocation.jl

• https://github.com/pengwyn/AutoParameters.jl

• ConcreteStructs.jl

• https://github.com/jlapeyre/ManualDispatch.jl

Traits

• Traits.jl

• SimpleTraits.jl

• BinaryTraits.jl, on discourse

Differential equations & numerical simulations

Packages

• DynamicalSystems.jl

• DifferentialEquations.jl webpage

• DifferentialEquations.jl documentation

  • https://github.com/SciML/OrdinaryDiffEq.jl

• Mera.jl

• Causal.jl

• ModiaSim

• SimJulia

• NetworkDynamics.jl

• https://github.com/PSORLab/DynamicBoundspODEsIneq.jl

• https://github.com/SciML/DiffEqUncertainty.jl

• https://github.com/AnHeuermann/JuliaFMI

• https://github.com/timueh/PolyChaos.jl article

• https://ymocquar.github.io/HOODESolver.jl/stable/quickstart/

• https://github.com/ketch/nodepy (Python)

Power systems

• NREL-SIIP

• Python Software for Symbolic Power System Modeling and Numerical Analysis, ANDES

Bayesian optimization

- [BayesianOptimization.jl](https://github.com/jbrea/BayesianOptimization.jl)

Model formats

• https://github.com/SciML/CellMLToolkit.jl

Circuits

• https://discourse.julialang.org/t/tann-view-post-process-analog-circuit-simulations/44658

Documentation

Packages

• Hosting documentation. Documenter help.

• Documenter showcase.

• SafeTestsets

• latex_symbols.jl

• Unicode input

• Literate.jl

• https://github.com/JunoLab/Weave.jl

• https://juliadocs.github.io/DocStringExtensions.jl/latest/index.html

• Publish.jl

• Latexify.jl

• Citations.jl

• DocumenterBibliographyTest.jl

• BibTeXFormat.jl

• BibTex.jl

Domain-specific language tools (DSL)

Packages

• ModelingToolkit

• Sims.jl

• Modia.jl

• Symbolics.jl

• ModelKit.jl

Macros

Packages

• ExprTools

• MacroTools

• Espresso

• Keyword dispatch

• ExtractMacro

Examples

• Some useful macros for Julia (MikeInnes)

Memoisation

Packages

• https://github.com/BenLauwens/ResumableFunctions.jl

• https://discourse.julialang.org/t/memoization-performance/26361

• https://gist.github.com/tk3369/877c2c60f41f6b0941e76e977e916192

• https://github.com/dalum/Purses.jl

• https://gitlab.com/volkerweissmann/SimpleCache.jl/-/tree/master/

Neural networks

Packages

• https://github.com/vtjeng/MIPVerify.jl

• https://github.com/castrong/NeuralOptimization.jl

Other

• https://github.com/JuliaReinforcementLearning/ReinforcementLearning.jl
• https://github.com/eschnett/SIMD.jl
• https://etymoio.github.io/EvolvingGraphs.jl/latest/
• https://github.com/bcbi/ExtensibleUnions.jl

Mathematical Optimization

Packages

• TrajectoryOptimization.jl

• https://github.com/ds4dm/Tulip.jl

• http://www.juliaopt.org/MathOptInterface.jl/dev/apimanual/#Standard-form-problem-1

• https://github.com/jump-dev/MatrixOptInterface.jl

• https://github.com/oxfordcontrol/COSMO.jl

• https://github.com/JuliaLinearOptimizers/Simplex.jl

• https://github.com/SCIP-Interfaces/SCIP.jl

• https://github.com/IainNZ/RationalSimplex.jl

• https://github.com/jw3126/Convex1D.jl

• https://github.com/SciML/GalacticOptim.jl

• CMAEvolutionStrategy, discourse announcement.

• https://psorlab.github.io/EAGO.jl/dev/

• https://github.com/newptcai/BEE.jl

• https://github.com/JuliaNLSolvers/ConstrainedOptim.jl

• https://github.com/JuliaFirstOrder

• https://juliafirstorder.github.io/PiecewiseQuadratics.jl/dev/

Packages (control)

https://github.com/cadojo/ControlTheoryNotes.jl

Parallelism

Packages

• https://github.com/jishnub/ParallelUtilities.jl

• https://stackoverflow.com/questions/50802184/julia-macro-threads-and-parallel

• https://julialang.org/blog/2019/07/multithreading/

• https://github.com/tkf/ThreadsX.jl

PDEs

Packages

• https://joss.theoj.org/papers/10.21105/joss.02369

• https://github.com/kinnala/scikit-fem

• https://scikit-fem.readthedocs.io/en/latest/listofexamples.html#example-2-kirchhoff-plate-bending-problem

• https://joss.theoj.org/papers/10.21105/joss.02520

• https://github.com/gridap/GridapODEs.jl

• https://github.com/lijas/IGA.jl

• femshop

• https://github.com/matthieugomez/EconPDEs.jl

• https://github.com/PetrKryslUCSD/Elfel.jl

• https://github.com/trixi-framework/Trixi.jl

• https://github.com/j-fu/ExtendableGrids.jl

Aerodynamics

• https://github.com/byuflowlab/VortexLattice.jl

Quantum

• https://github.com/QuantumControl-jl
• https://jebej.github.io/Schrodinger.jl/latest/index.html
• https://github.com/alastair-marshall/QuOptimalControl.jl/tree/master/src
• https://julialang.org/blog/2019/12/yao-differentiable-quantum-programming/
• https://iitis.github.io/QuantumInformation.jl/latest/man/states/

Tensors

• https://ericforgy.github.io/TensorAlgebra.jl/dev/#TensorKit.jl
• https://github.com/thisrod/Tensars.jl
• SymbolicTensors, see JuliaCon 2020 talk
• https://github.com/lanaperisa/TensorToolbox.jl
• https://github.com/adtzlr/ttb

Tutorials

• https://github.com/DataWookie/MonthOfJulia
• https://github.com/mitmath/18330/tree/spring20/lectures
• Fundamentales of Numerical Computation. By Tobin A. Driscoll and Richard J. Braun https://fncbook.github.io/fnc/intro/overview.html

---

• https://mitmath.github.io/18337/lecture2/optimizing

  • https://www.youtube.com/watch?v=M2i7sSRcSIw&feature=youtu.be
  • https://www.youtube.com/watch?v=10_Ukm9wr9g&feature=youtu.be

• https://www.youtube.com/watch?v=h-xVBD2Pk9o&feature=youtu.be

Visualization

• TreeViews
• https://nbviewer.jupyter.org/github/JuliaTeX/TikzGraphs.jl/blob/master/doc/TikzGraphs.ipynb
• https://lazarusa.github.io/Webpage/codeJuliaMakie.html
• https://github.com/jkrumbiegel/Animations.jl
• Interactive plotting https://angusmoore.github.io/Matte.jl/stable/index.html#Examples-1
• https://gist.github.com/mschauer/b1d7851bb2402c2b8434a797100a6c66#file-cormullion-png
• Javis.jl
• Plots @gif command
• https://gist.github.com/mschauer/b1d7851bb2402c2b8434a797100a6c66
• https://www.youtube.com/watch?v=L-gyDvhjzGQ
  • https://gist.github.com/Datseris/4b9d25a3ddb3936d3b83d3037f8188dd

Web

• https://shields.io/
• https://github.com/danielfrg/pelican-ipynb
• http://www.pelicanthemes.com/

Repeatability

Packages

• https://github.com/bcbi/GitCommand.jl

• https://github.com/KristofferC/RegistryCompatTools.jl

• https://github.com/bcbi/SimpleContainerGenerator.jl

<< Unsorted >>

Packages

• High order functions

• Dynamical systems modeling in Julia

• https://github.com/johnmyleswhite/julia_tutorials

• https://github.com/cjdoris/Python.jl

• http://xarray.pydata.org/

Web

Packages

• Presentations from markdown https://github.com/oxinabox/Remark.jl

• https://plotly.com/dash/

• https://franklinjl.org/

• https://tlienart.github.io/FranklinTemplates.jl/templates/basic/index.html#symbols_and_html_entities

• https://tlienart.github.io/PkgPage.jl/#about

• https://tlienart.github.io/FranklinTemplates.jl/

• https://waralex.github.io/Dashboards.jl/dev/

• https://medium.com/plotly/announcing-dash-for-julia-f017c90c6ef1

• https://dash-julia.plotly.com/getting-started

Tutorials

Tutorials in spanish

• Programación básica con Julia

Generators and iterators

• https://discourse.julialang.org/t/creating-generators/3962/28

• https://medium.com/@Jernfrost/generators-and-iterators-in-julia-and-python-6c9ace18fa93

Pluto notebooks

• https://andreaskroepelin.de/blog/plutoslides/
• fonsp/Pluto.jl#118 (comment)

Summer of code (JSoc / GSOC)

• https://nextjournal.com/sguadalupe, jsoc 2020

PBA

• https://github.com/uwplse/herbie
• https://github.com/AnderGray/ProbabilityBoundsAnalysis.jl

Interval methods

• JuliaIntervals
• https://github.com/fireofearth/ModalIntervalArithmetic.jl
• IntervalSets
• ...