From c33b2f8085bacc9e6e48173a096de6a2ece6dfca Mon Sep 17 00:00:00 2001
From: Matt Shirley <mdshw5@gmail.com>
Date: Wed, 27 Aug 2014 11:16:21 -0400
Subject: [PATCH] Potential fix for bug in #20. Pass initial arguments to Faidx
 when re-initializing after building an index.

---
 pyfaidx/__init__.py | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/pyfaidx/__init__.py b/pyfaidx/__init__.py
index 210d583..c13213e 100644
--- a/pyfaidx/__init__.py
+++ b/pyfaidx/__init__.py
@@ -170,7 +170,9 @@ def __init__(self, filename, default_seq=None, key_function=None,
         else:
             self.rebuild_index()
             self.write_fai()
-            self.__init__(filename, key_function)
+            self.__init__(filename, key_function=key_function,
+                          as_raw=as_raw,
+                          strict_bounds=strict_bounds)
 
     def __repr__(self):
         return 'Faidx("%s")' % (self.filename)