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Copy pathget-digital-objects-by-license-iri-no-params.rq
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get-digital-objects-by-license-iri-no-params.rq
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prefix obo: <http://purl.obolibrary.org/obo/>
PREFIX obc: <http://www.pitt.edu/obc/>
prefix dc: <http://purl.org/dc/elements/1.1/>
select distinct ?x ?doLabel ?doTypeLabel ?licenseLabel ?title ?sourceCodeRelease ?version ?doi ?doiURL ?synopsis ?sourceCodeRepositoryUrl ?executableName ?executableUrl ?webAppUrl ?documentationDescription ?documentationUrl ?websiteUrl ?developerName ?pubAbout ?pubThatUsedRelease ?formatSpecLabel ?inputSpecLabel ?outputSpecLabel ?olympus ?uids ?measureLabel
#select distinct *
from <http://www.pitt.edu/obc/ide/apollo-sv>
from <http://www.pitt.edu/obc/ide/classes-and-indexing-instances>
from <http://www.pitt.edu/obc/ide/article-instances>
from <http://www.pitt.edu/obc/ide/article-deleted-instances>
from <http://ide.obc.io/auth>
from <http://www.pitt.edu/obc/mdc/content>
from <http://www.pitt.edu/obc/simulates-instances>
where {
?licenseIri <http://purl.obolibrary.org/obo/BFO_0000050> ?x .
?x rdfs:label ?doLabel .
?x rdf:type ?doType .
?doType rdfs:label ?doTypeLabel .
#if there is a title annotation, get the title
OPTIONAL { ?x dc:title ?title } .
#get URL to source code for this version if present
OPTIONAL { ?x obo:ERO_0000480 ?sourceCodeRelease } .
#get version if present
OPTIONAL { ?y rdf:type obo:APOLLO_SV_00000108 .
?y obo:IAO_0000219 ?x .
?y rdfs:label ?version } .
#get DOI if present
OPTIONAL { ?z rdf:type obo:OBI_0002110 .
?z obo:IAO_0000219 ?x .
?z rdfs:label ?doi } .
#get DOI URL if present
OPTIONAL { ?z rdf:type obo:OBI_0002110 .
?z obo:IAO_0000219 ?x .
?z obo:ERO_0000480 ?doiURL } .
#get human readable synopsis if present
OPTIONAL { ?x obo:APOLLO_SV_00000523 ?synopsis } .
#get source code repository information if present
OPTIONAL { ?w rdf:type obo:APOLLO_SV_00000522 .
?x obo:BFO_0000050 ?w .
?w obo:ERO_0000480 ?sourceCodeRepositoryUrl } .
#get executable(s) name if present
OPTIONAL { ?v rdf:type obo:APOLLO_SV_00000525 .
?u rdf:type obo:APOLLO_SV_00000524 .
?u obo:OBI_0000293 ?x .
?u obo:OBI_0000299 ?v .
?v rdfs:label ?executableName } .
#get executable(s) url if present
OPTIONAL { ?v rdf:type obo:APOLLO_SV_00000525 .
?u rdf:type obo:APOLLO_SV_00000524 .
?u obo:OBI_0000293 ?x .
?u obo:OBI_0000299 ?v .
?v obo:ERO_0000480 ?executableUrl } .
#get web application url if present
OPTIONAL { ?v rdf:type obo:APOLLO_SV_00000525 .
?u rdf:type obo:APOLLO_SV_00000524 .
?u obo:OBI_0000293 ?x .
?u obo:OBI_0000299 ?v .
?g obo:OBI_0000417 ?v .
?g rdf:type obo:OBIws_0000050 .
?g obo:ERO_0000480 ?webAppUrl } .
#get documentation description if present
OPTIONAL { ?s rdf:type obo:IAO_0000310 .
?s obo:IAO_0000136 ?x .
?s rdfs:label ?documentationDescription } .
#get documentation URL if present
OPTIONAL { ?s rdf:type obo:IAO_0000310 .
?s obo:IAO_0000136 ?x .
?s obo:ERO_0000480 ?documentationUrl } .
#get website URL if present
OPTIONAL { ?o rdf:type obo:FBcv_0000667 .
?o obo:IAO_0000136 ?x .
?o obo:ERO_0000480 ?websiteUrl } .
#get software developer(s) if any
OPTIONAL { ?r rdf:type obo:BFO_0000040 .
?r obo:RO_0000053 ?q .
?q rdf:type obo:OMRSE_00000038 .
?p rdf:type obo:APOLLO_SV_00000008 .
?p obo:RO_0002218 ?r .
?p obo:OBI_0000299 ?x .
?r rdfs:label ?developerName } .
#get dataset developer(s) if any
OPTIONAL { ?r rdf:type obo:BFO_0000040 .
?r obo:RO_0000053 ?q .
?q rdf:type obo:OMRSE_00000038 .
?p rdf:type obo:APOLLO_SV_00000796 .
?p obo:RO_0002218 ?r .
?p obo:OBI_0000299 ?x .
?r rdfs:label ?developerName } .
#get data formats if any
OPTIONAL { ?datasetCreation obo:OBI_0000299 ?x . #creation of dataset has specified output the dataset
?datasetCreation obo:OBI_0000417 ?formatSpec . #creation of dataset achieves format spec objective
?datasetCreation rdf:type obo:APOLLO_SV_00000796 . #creation is instance of dataset creating
?formatSpec rdf:type obo:IAO_0000098 . #format spec is instance of data format spec
?formatSpec rdfs:label ?formatSpecLabel #format spec label
} .
#get RROO info if any
OPTIONAL {
?datasetConc rdf:type obo:IAO_0000015 . #the dataset concretization is an instance of information carrier
?x obo:RO_0000058 ?datasetConc . #and the dataset is concretized by dataset concretization
obo:IDE_0000000270 obo:RO_0000053 ?datasetConc . #and Olympus is the bearer of the dataset concretization
obo:IDE_0000000270 rdfs:label ?olympus #get label of Olympus individual
} .
#get publication(s) about if any
OPTIONAL { ?n obo:IAO_0000136 ?x .
?n rdf:type obo:IAO_0000311 .
?n rdfs:label ?pubAbout } .
#get publication(s) that used release if any
OPTIONAL { ?m obo:IAO_0000136 ?k . #m is about k
?k rdf:type obo:OBI_0000471 . #k is instance of study
?m rdf:type obo:IAO_0000311 . #m is instance of pub
?m dc:title ?pubThatUsedRelease . #m has label pubThatUsedRelease
?i obo:BFO_0000054 ?j . #i realized by j
?j rdf:type obo:OBIws_0000050 . #j is instance of code execution
?j obo:BFO_0000050 ?k . #j (execution) part of k (study)
?i rdf:type obo:APOLLO_SV_00000525 . #i instance of executable
?h obo:OBI_0000299 ?i . #i specified output of h
?h rdf:type obo:APOLLO_SV_00000524 . #h instance of compiling
?h obo:OBI_0000293 ?x #h has input the dtm
} .
#get data input formats if any
OPTIONAL { ?v rdf:type obo:APOLLO_SV_00000525 . #v is executable
?u rdf:type obo:APOLLO_SV_00000524 . #u is compiling
?u obo:OBI_0000293 ?x . #compiling has source code as input
?u obo:OBI_0000299 ?v . #compiling has executable as output
?parsingPlan obo:BFO_0000050 ?v . #data parsing plan spec part of executable
?dataParsing obo:OBI_0000417 ?parsingPlan . #parsing achieves parsing plan objective
?dataParsing obo:OBI_0000417 ?inputSpec . #parsing achieves spec objective
?dataParsing rdf:type obo:APOLLO_SV_00000566 . #parsing individual is instance of parsing
?inputSpec rdf:type obo:IAO_0000098 . #input spec is data format spec
?inputSpec rdfs:label ?inputSpecLabel #input spec label
} .
#get data output formats if any
OPTIONAL { ?v rdf:type obo:APOLLO_SV_00000525 . #v is executable
?u rdf:type obo:APOLLO_SV_00000524 . #u is compiling
?u obo:OBI_0000293 ?x . #compiling has source code as input
?u obo:OBI_0000299 ?v . #compiling has executable as output
?encodingPlan obo:BFO_0000050 ?v . #data encoding plan spec part of executable
?dataEncoding obo:OBI_0000417 ?encodingPlan . #encoding achieves encoding plan objective
?dataEncoding obo:OBI_0000417 ?outputSpec . #encoding achieves spec objective
?dataEncoding rdf:type obo:OBI_0000227 . #encoding individusal is instance of encoding
?outputSpec rdf:type obo:IAO_0000098 . #output spec is data format spec
?outputSpec rdfs:label ?outputSpecLabel #output spec label
} .
#get RROO info if any
OPTIONAL { ?v rdf:type obo:APOLLO_SV_00000525 . #v is executable
?u rdf:type obo:APOLLO_SV_00000524 . #u is compiling
?u obo:OBI_0000293 ?x . #compiling has source code as input
?u obo:OBI_0000299 ?v . #compiling has executable as output
?execConc rdf:type obo:IAO_0000015 . #the executable concretization is an instance of information carrier
?v obo:RO_0000058 ?execConc . #and the executable is concretized by executable concretization
obo:IDE_0000000270 obo:RO_0000053 ?execConc . #and Olympus is the bearer of the executable concretization
obo:IDE_0000000270 rdfs:label ?olympus #get label of Olympus individual
} .
#get UIDS info if any
OPTIONAL { ?v1 rdf:type obo:APOLLO_SV_00000525 . #v1 is executable
?u1 rdf:type obo:APOLLO_SV_00000524 . #u1 is compiling
?u1 obo:OBI_0000293 ?x . #compiling has source code as input
?u1 obo:OBI_0000299 ?v1 . #compiling has executable as output
?execConc1 rdf:type obo:IAO_0000015 . #the executable concretization is an instance of information carrier
?v1 obo:RO_0000058 ?execConc1 . #and the executable is concretized by executable concretization
?execDisp obo:APOLLO_SV_00000543 ?execConc1 . #the disposition to execute the software has its basis in the concretization
?invokeDisp obo:BFO_0000169 ?execDisp . #the UIDS disp to invoke the software specifically depends on the execute disposition
?invokeDisp obo:APOLLO_SV_00000543 ?uidsConc . #the concretization of UIDS software is the basis for the invoke disposition
?uidsExec obo:RO_0000058 ?uidsConc . #the UIDS executable is concretized by the concretizaiton of UIDS
?uidsCompiling obo:OBI_0000299 ?uidsExec . #the UIDS executable is the output of compiling UIDS source code
?uidsCompiling obo:OBI_0000293 ?uidsSource . #the IDS compiling has the UIDS source code as input
?uidsSource rdfs:label ?uids . #get the label for UIDS
} .
#get control measures if any
OPTIONAL { ?v3 rdf:type obo:APOLLO_SV_00000525 . #v3 is executable
?u3 rdf:type obo:APOLLO_SV_00000524 . #u3 is compiling
?u3 obo:OBI_0000293 ?x . #compiling has source code as input
?u3 obo:OBI_0000299 ?v3 . #compiling has executable as output
?simulatingx obo:OBI_0000417 ?v3 . #simulatingx achieves objective of executable
?simulatingx rdf:type obo:APOLLO_SV_00000005 . #simulatingx is instance of process of simulating process of type X
?simulatingx obo:OBI_0000299 ?measure . #simulatingx has output an infectious disease control measure
?measure rdf:type ?measureType . #control measure is an instance of a particular type
?measureType rdfs:label ?measureLabel . #get the label on the measure type
?measureType rdfs:subClassOf* obo:APOLLO_SV_00000086 #control measure type must be a type of control measure (otherwise we get other ICE/PIE output by simulation)
} .
{
?licenseIri rdf:type <http://purl.obolibrary.org/obo/APOLLO_SV_00000535> . #x is a license
?licenseIri rdfs:label ?licenseLabel
}
UNION
{
?licenseIri rdf:type <http://purl.obolibrary.org/obo/APOLLO_SV_00000798> . #x is a license
?licenseIri rdfs:label ?licenseLabel
}
}
order by lcase(?doTypeLabel)