diff --git a/src/Snakefiles/4-processONT.sm b/src/Snakefiles/4-processONT.sm index fc78cf40..e4cc23fd 100644 --- a/src/Snakefiles/4-processONT.sm +++ b/src/Snakefiles/4-processONT.sm @@ -86,7 +86,8 @@ cat alns-ont-nogap-2.gaf alns-ont-gap1.gaf alns-ont-gap2.gaf | {PYTHON} {VERKKO} cat gapped-twice-unitig-unrolled-hifi-resolved.gfa > gapped-unitig-unrolled-hifi-resolved.gfa -cat alns-ont-gap1.gaf alns-ont-gap2.gaf alns-ont-gap3.gaf > ../{output.ont_gap_align} +cat alns-ont-gap1.gaf alns-ont-gap2.gaf > ../{output.ont_gap_align} + echo "" echo Step 2b