Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Possible mis-assembly in mGorGor1 chr2_mat_hsa3:3,667,975-3,671,830 #3

Open
arangrhie opened this issue Jan 23, 2025 · 2 comments
Open

Possible mis-assembly in mGorGor1 chr2_mat_hsa3:3,667,975-3,671,830 #3

arangrhie opened this issue Jan 23, 2025 · 2 comments

Comments

@arangrhie
Copy link
Contributor

Image

A possible mis-assembly in the pCHT, with HiFi and ONT support. Read alignment indicates a ~1.6k region should be removed.

Reported by Peter Kerpedijiev. View on Resgen
@arangrhie
Copy link
Contributor Author

Confirmed this region was not reported in Flagger or NucFreq either.

@pkerpedjiev
Copy link

One more similar looking region at chr1_mat_hsa1:244,638,779-244,642,831:

https://resgen.io/paper-data/Yoo%202024%20-%20All/views/Hnu43h_jQp2fGdfbEPAJtg

Image

IGV:

Image

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@pkerpedjiev @arangrhie