diff --git a/README.rst b/README.rst index c19e1ed4..05bf788d 100644 --- a/README.rst +++ b/README.rst @@ -33,7 +33,7 @@ Usage of MACS2 :Example for regular peak calling: ``macs2 callpeak -t ChIP.bam -c Control.bam -f BAM -g hs -n test -B -q 0.01`` -:Example for broad peak calling: ``macs2 -t ChIP.bam -c Control.bam --broad -g hs`` +:Example for broad peak calling: ``macs2 callpeak -t ChIP.bam -c Control.bam --broad -g hs --broad-cutoff 0.1`` There are seven major functions available in MACS serving as sub-commands.