xiFDR and Kojak

[mhoopmann]

Hi Lutz,
Juri recommended I contact you over the GitHub repo. He and I had spoken at a meeting about using xiFDR to validate Kojak results, which I am trying to implement. I immediately hit a hurdle with my mzIdentML returning no results. I then wrote a converter to move the PSMs to CSV format, and results are returned there, but they are largely incorrect, with many decoys permeating the FDR threshold.

A lot of this may be me, not xiFDR, as there is obviously some expectations that I'm not meeting with Kojak. The details are quite lengthy and beyond what I should post here. Do you mind contacting me over email so we can discuss this? I think you'd be able to find me, but in case not, my contact info can be found here: http://www.kojak-ms.org/contact/

Thanks,
Mike