From 680e1b5b5101b34f4b5d0c3d4e61aeac2cad762c Mon Sep 17 00:00:00 2001
From: Lutz Fischer <lfischer@staffmail.ed.ac.uk>
Date: Fri, 16 Sep 2016 12:02:26 +0100
Subject: [PATCH] netbeans csv-command line config

---
 nb-configuration.xml          |  5 ++++
 nbactions-csv commandline.xml | 46 +++++++++++++++++++++++++++++++++++
 2 files changed, 51 insertions(+)
 create mode 100644 nbactions-csv commandline.xml

diff --git a/nb-configuration.xml b/nb-configuration.xml
index 0e565c6..eecaa13 100644
--- a/nb-configuration.xml
+++ b/nb-configuration.xml
@@ -6,6 +6,11 @@ The configuration is intended to be shared among all the users of project and
 therefore it is assumed to be part of version control checkout.
 Without this configuration present, some functionality in the IDE may be limited or fail altogether.
 -->
+    <config-data xmlns="http://www.netbeans.org/ns/maven-config-data/1">
+        <configurations>
+            <configuration id="csv commandline" profiles=""/>
+        </configurations>
+    </config-data>
     <properties xmlns="http://www.netbeans.org/ns/maven-properties-data/1">
         <!--
 Properties that influence various parts of the IDE, especially code formatting and the like. 
diff --git a/nbactions-csv commandline.xml b/nbactions-csv commandline.xml
new file mode 100644
index 0000000..9ac5539
--- /dev/null
+++ b/nbactions-csv commandline.xml	
@@ -0,0 +1,46 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<actions>
+        <action>
+            <actionName>run</actionName>
+            <packagings>
+                <packaging>jar</packaging>
+            </packagings>
+            <goals>
+                <goal>process-classes</goal>
+                <goal>org.codehaus.mojo:exec-maven-plugin:1.2.1:exec</goal>
+            </goals>
+            <properties>
+                <exec.args>-Xms1g -classpath %classpath org.rappsilber.fdr.CSVinFDR --help --uniquePSMs=F --csvOutDir=/home/lfischer/temp --csvBaseName=fdrcsvtest /home/lfischer/owncloudED/FromMichaelBerlin/3346_hsa_trypsin.csv</exec.args>
+                <exec.executable>java</exec.executable>
+            </properties>
+        </action>
+        <action>
+            <actionName>debug</actionName>
+            <packagings>
+                <packaging>jar</packaging>
+            </packagings>
+            <goals>
+                <goal>process-classes</goal>
+                <goal>org.codehaus.mojo:exec-maven-plugin:1.2.1:exec</goal>
+            </goals>
+            <properties>
+                <exec.args>-Xdebug -Xrunjdwp:transport=dt_socket,server=n,address=${jpda.address} -Xms1g -classpath %classpath org.rappsilber.fdr.CSVinFDR --help --uniquePSMs=F --csvOutDir=/home/lfischer/temp --csvBaseName=fdrcsvtest /home/lfischer/owncloudED/FromMichaelBerlin/3346_hsa_trypsin.csv</exec.args>
+                <exec.executable>java</exec.executable>
+                <jpda.listen>true</jpda.listen>
+            </properties>
+        </action>
+        <action>
+            <actionName>profile</actionName>
+            <packagings>
+                <packaging>jar</packaging>
+            </packagings>
+            <goals>
+                <goal>process-classes</goal>
+                <goal>org.codehaus.mojo:exec-maven-plugin:1.2.1:exec</goal>
+            </goals>
+            <properties>
+                <exec.args>-Xms1g -classpath %classpath org.rappsilber.fdr.CSVinFDR --help --uniquePSMs=F --csvOutDir=/home/lfischer/temp --csvBaseName=fdrcsvtest /home/lfischer/owncloudED/FromMichaelBerlin/3346_hsa_trypsin.csv</exec.args>
+                <exec.executable>java</exec.executable>
+            </properties>
+        </action>
+    </actions>