diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..dbc4941 --- /dev/null +++ b/.gitignore @@ -0,0 +1,9 @@ +# Gradle +.gradle +/build + +# Eclipse +*.classpath +*.project +*.settings +/bin diff --git a/build.gradle b/build.gradle new file mode 100644 index 0000000..4f45d34 --- /dev/null +++ b/build.gradle @@ -0,0 +1,34 @@ +/* + * This build file was generated by the Gradle 'init' task. + * + * This generated file contains a sample Java Library project to get you started. + * For more details take a look at the Java Libraries chapter in the Gradle + * user guide available at https://docs.gradle.org/3.4/userguide/java_library_plugin.html + */ + +// Apply the java-library plugin to add support for Java Library +apply plugin: 'java-library' + +// In this section you declare where to find the dependencies of your project +repositories { + // Use jcenter for resolving your dependencies. + // You can declare any Maven/Ivy/file repository here. + jcenter() + mavenCentral() +} + +dependencies { + // This dependency is exported to consumers, that is to say found on their compile classpath. + api 'org.apache.commons:commons-math3:3.6.1' + + // This dependency is used internally, and not exposed to consumers on their own compile classpath. + implementation 'com.google.guava:guava:20.0' + + // Use JUnit test framework + testImplementation 'junit:junit:4.12' + + // owl-api + compile 'net.sourceforge.owlapi:owlapi-distribution:4.2.8' + compile 'net.sourceforge.owlapi:org.semanticweb.hermit:1.3.8.413' +} + diff --git a/gradle/wrapper/gradle-wrapper.jar b/gradle/wrapper/gradle-wrapper.jar new file mode 100644 index 0000000..0122b1a Binary files /dev/null and b/gradle/wrapper/gradle-wrapper.jar differ diff --git a/gradle/wrapper/gradle-wrapper.properties b/gradle/wrapper/gradle-wrapper.properties new file mode 100644 index 0000000..f6eae08 --- /dev/null +++ b/gradle/wrapper/gradle-wrapper.properties @@ -0,0 +1,6 @@ +#Wed Feb 22 08:57:15 CET 2017 +distributionBase=GRADLE_USER_HOME +distributionPath=wrapper/dists +zipStoreBase=GRADLE_USER_HOME +zipStorePath=wrapper/dists +distributionUrl=https\://services.gradle.org/distributions/gradle-3.4-bin.zip diff --git a/gradlew b/gradlew new file mode 100644 index 0000000..4453cce --- /dev/null +++ b/gradlew @@ -0,0 +1,172 @@ +#!/usr/bin/env sh + +############################################################################## +## +## Gradle start up script for UN*X +## +############################################################################## + +# Attempt to set APP_HOME +# Resolve links: $0 may be a link +PRG="$0" +# Need this for relative symlinks. +while [ -h "$PRG" ] ; do + ls=`ls -ld "$PRG"` + link=`expr "$ls" : '.*-> \(.*\)$'` + if expr "$link" : '/.*' > /dev/null; then + PRG="$link" + else + PRG=`dirname "$PRG"`"/$link" + fi +done +SAVED="`pwd`" +cd "`dirname \"$PRG\"`/" >/dev/null +APP_HOME="`pwd -P`" +cd "$SAVED" >/dev/null + +APP_NAME="Gradle" +APP_BASE_NAME=`basename "$0"` + +# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script. +DEFAULT_JVM_OPTS="" + +# Use the maximum available, or set MAX_FD != -1 to use that value. +MAX_FD="maximum" + +warn ( ) { + echo "$*" +} + +die ( ) { + echo + echo "$*" + echo + exit 1 +} + +# OS specific support (must be 'true' or 'false'). +cygwin=false +msys=false +darwin=false +nonstop=false +case "`uname`" in + CYGWIN* ) + cygwin=true + ;; + Darwin* ) + darwin=true + ;; + MINGW* ) + msys=true + ;; + NONSTOP* ) + nonstop=true + ;; +esac + +CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar + +# Determine the Java command to use to start the JVM. +if [ -n "$JAVA_HOME" ] ; then + if [ -x "$JAVA_HOME/jre/sh/java" ] ; then + # IBM's JDK on AIX uses strange locations for the executables + JAVACMD="$JAVA_HOME/jre/sh/java" + else + JAVACMD="$JAVA_HOME/bin/java" + fi + if [ ! -x "$JAVACMD" ] ; then + die "ERROR: JAVA_HOME is set to an invalid directory: $JAVA_HOME + +Please set the JAVA_HOME variable in your environment to match the +location of your Java installation." + fi +else + JAVACMD="java" + which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. + +Please set the JAVA_HOME variable in your environment to match the +location of your Java installation." +fi + +# Increase the maximum file descriptors if we can. +if [ "$cygwin" = "false" -a "$darwin" = "false" -a "$nonstop" = "false" ] ; then + MAX_FD_LIMIT=`ulimit -H -n` + if [ $? -eq 0 ] ; then + if [ "$MAX_FD" = "maximum" -o "$MAX_FD" = "max" ] ; then + MAX_FD="$MAX_FD_LIMIT" + fi + ulimit -n $MAX_FD + if [ $? -ne 0 ] ; then + warn "Could not set maximum file descriptor limit: $MAX_FD" + fi + else + warn "Could not query maximum file descriptor limit: $MAX_FD_LIMIT" + fi +fi + +# For Darwin, add options to specify how the application appears in the dock +if $darwin; then + GRADLE_OPTS="$GRADLE_OPTS \"-Xdock:name=$APP_NAME\" \"-Xdock:icon=$APP_HOME/media/gradle.icns\"" +fi + +# For Cygwin, switch paths to Windows format before running java +if $cygwin ; then + APP_HOME=`cygpath --path --mixed "$APP_HOME"` + CLASSPATH=`cygpath --path --mixed "$CLASSPATH"` + JAVACMD=`cygpath --unix "$JAVACMD"` + + # We build the pattern for arguments to be converted via cygpath + ROOTDIRSRAW=`find -L / -maxdepth 1 -mindepth 1 -type d 2>/dev/null` + SEP="" + for dir in $ROOTDIRSRAW ; do + ROOTDIRS="$ROOTDIRS$SEP$dir" + SEP="|" + done + OURCYGPATTERN="(^($ROOTDIRS))" + # Add a user-defined pattern to the cygpath arguments + if [ "$GRADLE_CYGPATTERN" != "" ] ; then + OURCYGPATTERN="$OURCYGPATTERN|($GRADLE_CYGPATTERN)" + fi + # Now convert the arguments - kludge to limit ourselves to /bin/sh + i=0 + for arg in "$@" ; do + CHECK=`echo "$arg"|egrep -c "$OURCYGPATTERN" -` + CHECK2=`echo "$arg"|egrep -c "^-"` ### Determine if an option + + if [ $CHECK -ne 0 ] && [ $CHECK2 -eq 0 ] ; then ### Added a condition + eval `echo args$i`=`cygpath --path --ignore --mixed "$arg"` + else + eval `echo args$i`="\"$arg\"" + fi + i=$((i+1)) + done + case $i in + (0) set -- ;; + (1) set -- "$args0" ;; + (2) set -- "$args0" "$args1" ;; + (3) set -- "$args0" "$args1" "$args2" ;; + (4) set -- "$args0" "$args1" "$args2" "$args3" ;; + (5) set -- "$args0" "$args1" "$args2" "$args3" "$args4" ;; + (6) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" ;; + (7) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" ;; + (8) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" ;; + (9) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" "$args8" ;; + esac +fi + +# Escape application args +save ( ) { + for i do printf %s\\n "$i" | sed "s/'/'\\\\''/g;1s/^/'/;\$s/\$/' \\\\/" ; done + echo " " +} +APP_ARGS=$(save "$@") + +# Collect all arguments for the java command, following the shell quoting and substitution rules +eval set -- $DEFAULT_JVM_OPTS $JAVA_OPTS $GRADLE_OPTS "\"-Dorg.gradle.appname=$APP_BASE_NAME\"" -classpath "\"$CLASSPATH\"" org.gradle.wrapper.GradleWrapperMain "$APP_ARGS" + +# by default we should be in the correct project dir, but when run from Finder on Mac, the cwd is wrong +if [ "$(uname)" = "Darwin" ] && [ "$HOME" = "$PWD" ]; then + cd "$(dirname "$0")" +fi + +exec "$JAVACMD" "$@" diff --git a/gradlew.bat b/gradlew.bat new file mode 100644 index 0000000..e95643d --- /dev/null +++ b/gradlew.bat @@ -0,0 +1,84 @@ +@if "%DEBUG%" == "" @echo off +@rem ########################################################################## +@rem +@rem Gradle startup script for Windows +@rem +@rem ########################################################################## + +@rem Set local scope for the variables with windows NT shell +if "%OS%"=="Windows_NT" setlocal + +set DIRNAME=%~dp0 +if "%DIRNAME%" == "" set DIRNAME=. +set APP_BASE_NAME=%~n0 +set APP_HOME=%DIRNAME% + +@rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script. +set DEFAULT_JVM_OPTS= + +@rem Find java.exe +if defined JAVA_HOME goto findJavaFromJavaHome + +set JAVA_EXE=java.exe +%JAVA_EXE% -version >NUL 2>&1 +if "%ERRORLEVEL%" == "0" goto init + +echo. +echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. +echo. +echo Please set the JAVA_HOME variable in your environment to match the +echo location of your Java installation. + +goto fail + +:findJavaFromJavaHome +set JAVA_HOME=%JAVA_HOME:"=% +set JAVA_EXE=%JAVA_HOME%/bin/java.exe + +if exist "%JAVA_EXE%" goto init + +echo. +echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME% +echo. +echo Please set the JAVA_HOME variable in your environment to match the +echo location of your Java installation. + +goto fail + +:init +@rem Get command-line arguments, handling Windows variants + +if not "%OS%" == "Windows_NT" goto win9xME_args + +:win9xME_args +@rem Slurp the command line arguments. +set CMD_LINE_ARGS= +set _SKIP=2 + +:win9xME_args_slurp +if "x%~1" == "x" goto execute + +set CMD_LINE_ARGS=%* + +:execute +@rem Setup the command line + +set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar + +@rem Execute Gradle +"%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %GRADLE_OPTS% "-Dorg.gradle.appname=%APP_BASE_NAME%" -classpath "%CLASSPATH%" org.gradle.wrapper.GradleWrapperMain %CMD_LINE_ARGS% + +:end +@rem End local scope for the variables with windows NT shell +if "%ERRORLEVEL%"=="0" goto mainEnd + +:fail +rem Set variable GRADLE_EXIT_CONSOLE if you need the _script_ return code instead of +rem the _cmd.exe /c_ return code! +if not "" == "%GRADLE_EXIT_CONSOLE%" exit 1 +exit /b 1 + +:mainEnd +if "%OS%"=="Windows_NT" endlocal + +:omega diff --git a/resources/university.owl b/resources/university.owl new file mode 100644 index 0000000..cb74893 --- /dev/null +++ b/resources/university.owl @@ -0,0 +1,478 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + 1 + + + + + + + 1 + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + + + + + + + + + + + + + + + 10 + + + + + + + 1 + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + + + + + + + + + + + + + Laurea triennale in Ingegneria Informatica + + + + + + + + + 8 + 80 + Informatica + + + + + + + + + + true + Fulvio Corno + + + + + + + + + + + Luigi De Russis + + + + + + + + + Laurea magistrale in Ingegneria Informatica + + + + + + + + + 10 + 100 + Analisi matematica I + + + + + + + + + + Dottorato in Ingegneria Informatica e dei sistemi + + + + + + + + + Politecnico di Milano + + + + + + + + + + + + Politecnico di Torino + + + + + + + + + 20 + Semantic Web + + + + + + + + + + + + + + + + + + + + diff --git a/settings.gradle b/settings.gradle new file mode 100644 index 0000000..2c4be52 --- /dev/null +++ b/settings.gradle @@ -0,0 +1,18 @@ +/* + * This settings file was generated by the Gradle 'init' task. + * + * The settings file is used to specify which projects to include in your build. + * In a single project build this file can be empty or even removed. + * + * Detailed information about configuring a multi-project build in Gradle can be found + * in the user guide at https://docs.gradle.org/3.4/userguide/multi_project_builds.html + */ + +/* +// To declare projects as part of a multi-project build use the 'include' method +include 'shared' +include 'api' +include 'services:webservice' +*/ + +rootProject.name = 'university-app' diff --git a/src/main/java/it/polito/elite/semantic/example/OWLApiExample.java b/src/main/java/it/polito/elite/semantic/example/OWLApiExample.java new file mode 100644 index 0000000..d5f6813 --- /dev/null +++ b/src/main/java/it/polito/elite/semantic/example/OWLApiExample.java @@ -0,0 +1,149 @@ +package it.polito.elite.semantic.example; + +import java.io.File; +import java.util.HashSet; +import java.util.Set; + +import org.semanticweb.HermiT.ReasonerFactory; +import org.semanticweb.owlapi.apibinding.OWLManager; +import org.semanticweb.owlapi.model.IRI; +import org.semanticweb.owlapi.model.OWLClass; +import org.semanticweb.owlapi.model.OWLDataFactory; +import org.semanticweb.owlapi.model.OWLDataProperty; +import org.semanticweb.owlapi.model.OWLEntity; +import org.semanticweb.owlapi.model.OWLIndividual; +import org.semanticweb.owlapi.model.OWLNamedIndividual; +import org.semanticweb.owlapi.model.OWLOntology; +import org.semanticweb.owlapi.model.OWLOntologyCreationException; +import org.semanticweb.owlapi.model.OWLOntologyManager; +import org.semanticweb.owlapi.reasoner.ConsoleProgressMonitor; +import org.semanticweb.owlapi.reasoner.InferenceType; +import org.semanticweb.owlapi.reasoner.NodeSet; +import org.semanticweb.owlapi.reasoner.OWLReasoner; +import org.semanticweb.owlapi.reasoner.OWLReasonerConfiguration; +import org.semanticweb.owlapi.reasoner.OWLReasonerFactory; +import org.semanticweb.owlapi.reasoner.SimpleConfiguration; +import org.semanticweb.owlapi.search.EntitySearcher; +import org.semanticweb.owlapi.util.DefaultPrefixManager; + +import uk.ac.manchester.cs.owl.owlapi.OWLDataPropertyImpl; +import uk.ac.manchester.cs.owl.owlapi.OWLObjectPropertyImpl; + +/** + * Example of use of OWL-API 4.x and the HermiT reasoner. + * Realized with Gradle and Java 8. + * + * Semantic Web course, Politecnico di Torino, Italy + * + * @author Luigi De Russis, Politecnico di Torino, + * e-Lite group + * @version 1.0 (2017-02-22) + * + */ +public class OWLApiExample +{ + + public static void main(String[] args) + { + // init + OWLOntologyManager manager = OWLManager.createOWLOntologyManager(); + File university = new File("resources/university.owl"); + OWLOntology localUni; + + try + { + // load the (local) OWL ontology + localUni = manager.loadOntologyFromOntologyDocument(university); + System.out.println("Loaded ontology: " + localUni.getOntologyID()); + IRI location = manager.getOntologyDocumentIRI(localUni); + System.out.println("\tfrom: " + location); + + long time = System.currentTimeMillis(); + + // get and configure a reasoner (HermiT) + OWLReasonerFactory reasonerFactory = new ReasonerFactory(); + ConsoleProgressMonitor progressMonitor = new ConsoleProgressMonitor(); + OWLReasonerConfiguration config = new SimpleConfiguration(progressMonitor); + + // create the reasoner instance, classify and compute inferences + OWLReasoner reasoner = reasonerFactory.createReasoner(localUni, config); + // perform all the inferences now, to avoid subsequent ad-hoc + // reasoner calls + reasoner.precomputeInferences(InferenceType.values()); + + // init prefix manager + DefaultPrefixManager pm = new DefaultPrefixManager(null, null, + "http://elite.polito.it/ontologies/university.owl#"); + // pm.setPrefix("another:", "http://elite.polito.it/ontologies/anotheront.owl#"); + + // get all the universities + OWLDataFactory fac = manager.getOWLDataFactory(); + OWLClass universities = fac.getOWLClass(IRI.create(pm.getDefaultPrefix(), "University")); + NodeSet individualsNodeSet = reasoner.getInstances(universities, false); + Set individuals = individualsNodeSet.getFlattened(); + + for (OWLNamedIndividual uni : individuals) + { + // print the individual name + System.out.println("Individual Name: " + pm.getShortForm(uni)); + + // get university name + OWLDataProperty universityName = new OWLDataPropertyImpl( + IRI.create(pm.getDefaultPrefix() + "universityName")); + System.out.println(EntitySearcher.getDataPropertyValues(uni, universityName, localUni)); + + // get offered degrees (i.e., "offersDegree" obj property) + OWLObjectPropertyImpl op = new OWLObjectPropertyImpl( + IRI.create(pm.getDefaultPrefix() + "offersDegree")); + Set offersDegree = new HashSet<>( + EntitySearcher.getObjectPropertyValues(uni, op, localUni)); + for (OWLIndividual degree : offersDegree) + { + System.out.println("\n\toffersDegree: " + pm.getShortForm((OWLEntity) degree)); + + // get degree name + OWLDataProperty degreeName = new OWLDataPropertyImpl( + IRI.create(pm.getDefaultPrefix() + "degreeName")); + System.out.println("\t" + EntitySearcher.getDataPropertyValues(degree, degreeName, localUni)); + + // get offered courses ("offersCourse" obj property) + OWLObjectPropertyImpl c = new OWLObjectPropertyImpl( + IRI.create(pm.getDefaultPrefix() + "offersCourse")); + Set offersCourse = new HashSet<>( + EntitySearcher.getObjectPropertyValues(degree, c, localUni)); + for (OWLIndividual course : offersCourse) + { + System.out.println("\t\toffersCourse: " + pm.getShortForm((OWLEntity) course)); + + // get enrolled students ("isFollowed" obj property) + OWLObjectPropertyImpl f = new OWLObjectPropertyImpl( + IRI.create(pm.getDefaultPrefix() + "isFollowed")); + // the following line does not work since we defined + // only the "follows" property, and this as the inverse + // Set isFollowed = new HashSet<>( + // EntitySearcher.getObjectPropertyValues(course, f, localUni)); + Set isFollowed = reasoner + .getObjectPropertyValues(course.asOWLNamedIndividual(), f).getFlattened(); + for (OWLIndividual student : isFollowed) + { + System.out.println("\t\t\tisFollowed: " + pm.getShortForm((OWLEntity) student)); + } + + } + } + + System.out.println("---"); + } + System.err.println("All universities (" + individuals.size() + ") extracted in " + + (float) (System.currentTimeMillis() - time) / 1000 + " seconds."); + + } + catch (OWLOntologyCreationException e) + { + System.err.println("Impossible to load " + university.getAbsolutePath()); + e.printStackTrace(); + } + + } + +} \ No newline at end of file diff --git a/src/test/java/OWLAPIExampleTest.java b/src/test/java/OWLAPIExampleTest.java new file mode 100644 index 0000000..964a837 --- /dev/null +++ b/src/test/java/OWLAPIExampleTest.java @@ -0,0 +1,11 @@ +/* + * This Java source file was generated by the Gradle 'init' task. + */ +import org.junit.Test; + + +public class OWLAPIExampleTest { + @Test public void testSomeLibraryMethod() { + + } +}