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BBBC022_createIllumImages.cppipe
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CellProfiler Pipeline: http://www.cellprofiler.org
Version:4
DateRevision:315
GitHash:
ModuleCount:14
HasImagePlaneDetails:False
Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
:\xff\xfe
Filter images?:\xff\xfeI\x00m\x00a\x00g\x00e\x00s\x00 \x00o\x00n\x00l\x00y\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00e\x00x\x00t\x00e\x00n\x00s\x00i\x00o\x00n\x00 \x00d\x00o\x00e\x00s\x00 \x00i\x00s\x00i\x00m\x00a\x00g\x00e\x00)\x00 \x00(\x00d\x00i\x00r\x00e\x00c\x00t\x00o\x00r\x00y\x00 \x00d\x00o\x00e\x00s\x00n\x00o\x00t\x00 \x00c\x00o\x00n\x00t\x00a\x00i\x00n\x00r\x00e\x00g\x00e\x00x\x00p\x00 \x00"\x00\x5B\x00\\\x00\\\x00\\\x00\\\x00/\x00\x5D\x00\\\x00\\\x00.\x00"\x00)\x00
Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:5|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Extract metadata?:\xff\xfeY\x00e\x00s\x00
Metadata data type:\xff\xfeT\x00e\x00x\x00t\x00
Metadata types:\xff\xfe{\x00}\x00
Extraction method count:\xff\xfe3\x00
Metadata extraction method:\xff\xfeE\x00x\x00t\x00r\x00a\x00c\x00t\x00 \x00f\x00r\x00o\x00m\x00 \x00f\x00i\x00l\x00e\x00/\x00f\x00o\x00l\x00d\x00e\x00r\x00 \x00n\x00a\x00m\x00e\x00s\x00
Metadata source:\xff\xfeF\x00i\x00l\x00e\x00 \x00n\x00a\x00m\x00e\x00
Regular expression to extract from file name:\xff\xfe^\x00.\x00*\x00_\x00(\x00?\x00P\x00<\x00W\x00e\x00l\x00l\x00>\x00\x5B\x00A\x00-\x00P\x00\x5D\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00_\x00s\x00(\x00?\x00P\x00<\x00S\x00i\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00_\x00w\x00(\x00?\x00P\x00<\x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00
Regular expression to extract from folder name:\xff\xfe(\x00?\x00P\x00<\x00D\x00a\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x004\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00$\x00
Extract metadata from:\xff\xfeA\x00l\x00l\x00 \x00i\x00m\x00a\x00g\x00e\x00s\x00
Select the filtering criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00c\x00o\x00n\x00t\x00a\x00i\x00n\x00 \x00"\x00"\x00)\x00
Metadata file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Match file and image metadata:\xff\xfe\x5B\x00\x5D\x00
Use case insensitive matching?:\xff\xfeN\x00o\x00
Metadata file name:\xff\xfeN\x00o\x00n\x00e\x00
Metadata extraction method:\xff\xfeE\x00x\x00t\x00r\x00a\x00c\x00t\x00 \x00f\x00r\x00o\x00m\x00 \x00f\x00i\x00l\x00e\x00/\x00f\x00o\x00l\x00d\x00e\x00r\x00 \x00n\x00a\x00m\x00e\x00s\x00
Metadata source:\xff\xfeF\x00o\x00l\x00d\x00e\x00r\x00 \x00n\x00a\x00m\x00e\x00
Regular expression to extract from file name:\xff\xfe^\x00(\x00?\x00P\x00<\x00P\x00l\x00a\x00t\x00e\x00>\x00.\x00*\x00)\x00_\x00(\x00?\x00P\x00<\x00W\x00e\x00l\x00l\x00>\x00\x5B\x00A\x00-\x00P\x00\x5D\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00_\x00s\x00(\x00?\x00P\x00<\x00S\x00i\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00_\x00w\x00(\x00?\x00P\x00<\x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00
Regular expression to extract from folder name:\xff\xfe(\x00?\x00P\x00<\x00P\x00l\x00a\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x005\x00}\x00)\x00
Extract metadata from:\xff\xfeA\x00l\x00l\x00 \x00i\x00m\x00a\x00g\x00e\x00s\x00
Select the filtering criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00c\x00o\x00n\x00t\x00a\x00i\x00n\x00 \x00"\x00"\x00)\x00
Metadata file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Match file and image metadata:\xff\xfe\x5B\x00\x5D\x00
Use case insensitive matching?:\xff\xfeN\x00o\x00
Metadata file name:\xff\xfeN\x00o\x00n\x00e\x00
Metadata extraction method:\xff\xfeI\x00m\x00p\x00o\x00r\x00t\x00 \x00f\x00r\x00o\x00m\x00 \x00f\x00i\x00l\x00e\x00
Metadata source:\xff\xfeF\x00i\x00l\x00e\x00 \x00n\x00a\x00m\x00e\x00
Regular expression to extract from file name:\xff\xfe^\x00(\x00?\x00P\x00<\x00P\x00l\x00a\x00t\x00e\x00>\x00.\x00*\x00)\x00_\x00(\x00?\x00P\x00<\x00W\x00e\x00l\x00l\x00>\x00\x5B\x00A\x00-\x00P\x00\x5D\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00_\x00s\x00(\x00?\x00P\x00<\x00S\x00i\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00_\x00w\x00(\x00?\x00P\x00<\x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00
Regular expression to extract from folder name:\xff\xfe(\x00?\x00P\x00<\x00D\x00a\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x004\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00$\x00
Extract metadata from:\xff\xfeA\x00l\x00l\x00 \x00i\x00m\x00a\x00g\x00e\x00s\x00
Select the filtering criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00c\x00o\x00n\x00t\x00a\x00i\x00n\x00 \x00"\x00"\x00)\x00
Metadata file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00D\x00\x3A\x00\\\x00B\x00B\x00B\x00C\x000\x002\x002\x00
Match file and image metadata:\xff\xfe\x5B\x00{\x00\'\x00I\x00m\x00a\x00g\x00e\x00 \x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00\'\x00\x3A\x00 \x00u\x00\'\x00S\x00i\x00t\x00e\x00\'\x00,\x00 \x00\'\x00C\x00S\x00V\x00 \x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00\'\x00\x3A\x00 \x00u\x00\'\x00I\x00m\x00a\x00g\x00e\x00_\x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00_\x00S\x00i\x00t\x00e\x00\'\x00}\x00,\x00 \x00{\x00\'\x00I\x00m\x00a\x00g\x00e\x00 \x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00\'\x00C\x00S\x00V\x00 \x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00\'\x00\x3A\x00 \x00u\x00\'\x00I\x00m\x00a\x00g\x00e\x00_\x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00_\x00P\x00l\x00a\x00t\x00e\x00I\x00D\x00\'\x00}\x00,\x00 \x00{\x00\'\x00I\x00m\x00a\x00g\x00e\x00 \x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00\'\x00\x3A\x00 \x00u\x00\'\x00W\x00e\x00l\x00l\x00\'\x00,\x00 \x00\'\x00C\x00S\x00V\x00 \x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00\'\x00\x3A\x00 \x00u\x00\'\x00I\x00m\x00a\x00g\x00e\x00_\x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00_\x00C\x00P\x00D\x00_\x00W\x00E\x00L\x00L\x00_\x00P\x00O\x00S\x00I\x00T\x00I\x00O\x00N\x00\'\x00}\x00\x5D\x00
Use case insensitive matching?:\xff\xfeN\x00o\x00
Metadata file name:\xff\xfeB\x00B\x00B\x00C\x000\x002\x002\x00_\x00v\x001\x00_\x00i\x00m\x00a\x00g\x00e\x00.\x00c\x00s\x00v\x00
NamesAndTypes:[module_num:3|svn_version:\'Unknown\'|variable_revision_number:8|show_window:False|notes:\x5B\'The NamesAndTypes module allows you to assign a meaningful name to each image by which other modules will refer to it.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Assign a name to:\xff\xfeI\x00m\x00a\x00g\x00e\x00s\x00 \x00m\x00a\x00t\x00c\x00h\x00i\x00n\x00g\x00 \x00r\x00u\x00l\x00e\x00s\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Name to assign these images:\xff\xfeD\x00N\x00A\x00
Match metadata:\xff\xfe\x5B\x00{\x00u\x00\'\x00M\x00i\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00E\x00R\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00S\x00y\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00}\x00,\x00 \x00{\x00u\x00\'\x00M\x00i\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00W\x00e\x00l\x00l\x00\'\x00,\x00 \x00u\x00\'\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00\'\x00\x3A\x00 \x00u\x00\'\x00W\x00e\x00l\x00l\x00\'\x00,\x00 \x00u\x00\'\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00\'\x00\x3A\x00 \x00u\x00\'\x00W\x00e\x00l\x00l\x00\'\x00,\x00 \x00u\x00\'\x00E\x00R\x00\'\x00\x3A\x00 \x00u\x00\'\x00W\x00e\x00l\x00l\x00\'\x00,\x00 \x00u\x00\'\x00S\x00y\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00W\x00e\x00l\x00l\x00\'\x00}\x00,\x00 \x00{\x00u\x00\'\x00S\x00y\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00S\x00i\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00M\x00i\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00S\x00i\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00\'\x00\x3A\x00 \x00u\x00\'\x00S\x00i\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00E\x00R\x00\'\x00\x3A\x00 \x00u\x00\'\x00S\x00i\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00\'\x00\x3A\x00 \x00u\x00\'\x00S\x00i\x00t\x00e\x00\'\x00}\x00\x5D\x00
Image set matching method:\xff\xfeM\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Assignments count:\xff\xfe5\x00
Single images count:\xff\xfe0\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Process as 3D?:\xff\xfeN\x00o\x00
Relative pixel spacing in X:\xff\xfe1\x00.\x000\x00
Relative pixel spacing in Y:\xff\xfe1\x00.\x000\x00
Relative pixel spacing in Z:\xff\xfe1\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x001\x00"\x00)\x00
Name to assign these images:\xff\xfeH\x00o\x00e\x00c\x00h\x00s\x00t\x00
Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x002\x00"\x00)\x00
Name to assign these images:\xff\xfeE\x00R\x00
Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x003\x00"\x00)\x00
Name to assign these images:\xff\xfeS\x00y\x00t\x00o\x00
Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x004\x00"\x00)\x00
Name to assign these images:\xff\xfeP\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x005\x00"\x00)\x00
Name to assign these images:\xff\xfeM\x00i\x00t\x00o\x00
Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Groups:[module_num:4|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'The Groups module optionally allows you to split your list of images into image subsets (groups) which will be processed independently of each other. Examples of groupings include screening batches, microtiter plates, time-lapse movies, etc.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Do you want to group your images?:\xff\xfeY\x00e\x00s\x00
grouping metadata count:\xff\xfe1\x00
Metadata category:\xff\xfeP\x00l\x00a\x00t\x00e\x00
CorrectIlluminationCalculate:[module_num:5|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the input image:\xff\xfeE\x00R\x00
Name the output image:\xff\xfeI\x00l\x00l\x00u\x00m\x00E\x00R\x00
Select how the illumination function is calculated:\xff\xfeR\x00e\x00g\x00u\x00l\x00a\x00r\x00
Dilate objects in the final averaged image?:\xff\xfeN\x00o\x00
Dilation radius:\xff\xfe1\x00
Block size:\xff\xfe6\x000\x00
Rescale the illumination function?:\xff\xfeY\x00e\x00s\x00
Calculate function for each image individually, or based on all images?:\xff\xfeA\x00l\x00l\x00\x3A\x00 \x00A\x00c\x00r\x00o\x00s\x00s\x00 \x00c\x00y\x00c\x00l\x00e\x00s\x00
Smoothing method:\xff\xfeG\x00a\x00u\x00s\x00s\x00i\x00a\x00n\x00 \x00F\x00i\x00l\x00t\x00e\x00r\x00
Method to calculate smoothing filter size:\xff\xfeM\x00a\x00n\x00u\x00a\x00l\x00l\x00y\x00
Approximate object diameter:\xff\xfe1\x000\x00
Smoothing filter size:\xff\xfe1\x005\x000\x00
Retain the averaged image?:\xff\xfeN\x00o\x00
Name the averaged image:\xff\xfeI\x00l\x00l\x00u\x00m\x00B\x00l\x00u\x00e\x00A\x00v\x00g\x00
Retain the dilated image?:\xff\xfeN\x00o\x00
Name the dilated image:\xff\xfeI\x00l\x00l\x00u\x00m\x00B\x00l\x00u\x00e\x00D\x00i\x00l\x00a\x00t\x00e\x00d\x00
Automatically calculate spline parameters?:\xff\xfeY\x00e\x00s\x00
Background mode:\xff\xfea\x00u\x00t\x00o\x00
Number of spline points:\xff\xfe5\x00
Background threshold:\xff\xfe2\x00.\x000\x00
Image resampling factor:\xff\xfe2\x00.\x000\x00
Maximum number of iterations:\xff\xfe4\x000\x00
Residual value for convergence:\xff\xfe0\x00.\x000\x000\x001\x00
CorrectIlluminationCalculate:[module_num:6|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the input image:\xff\xfeH\x00o\x00e\x00c\x00h\x00s\x00t\x00
Name the output image:\xff\xfeI\x00l\x00l\x00u\x00m\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00
Select how the illumination function is calculated:\xff\xfeR\x00e\x00g\x00u\x00l\x00a\x00r\x00
Dilate objects in the final averaged image?:\xff\xfeN\x00o\x00
Dilation radius:\xff\xfe1\x00
Block size:\xff\xfe6\x000\x00
Rescale the illumination function?:\xff\xfeY\x00e\x00s\x00
Calculate function for each image individually, or based on all images?:\xff\xfeA\x00l\x00l\x00\x3A\x00 \x00A\x00c\x00r\x00o\x00s\x00s\x00 \x00c\x00y\x00c\x00l\x00e\x00s\x00
Smoothing method:\xff\xfeG\x00a\x00u\x00s\x00s\x00i\x00a\x00n\x00 \x00F\x00i\x00l\x00t\x00e\x00r\x00
Method to calculate smoothing filter size:\xff\xfeM\x00a\x00n\x00u\x00a\x00l\x00l\x00y\x00
Approximate object diameter:\xff\xfe1\x000\x00
Smoothing filter size:\xff\xfe1\x005\x000\x00
Retain the averaged image?:\xff\xfeN\x00o\x00
Name the averaged image:\xff\xfeI\x00l\x00l\x00u\x00m\x00B\x00l\x00u\x00e\x00A\x00v\x00g\x00
Retain the dilated image?:\xff\xfeN\x00o\x00
Name the dilated image:\xff\xfeI\x00l\x00l\x00u\x00m\x00B\x00l\x00u\x00e\x00D\x00i\x00l\x00a\x00t\x00e\x00d\x00
Automatically calculate spline parameters?:\xff\xfeY\x00e\x00s\x00
Background mode:\xff\xfea\x00u\x00t\x00o\x00
Number of spline points:\xff\xfe5\x00
Background threshold:\xff\xfe2\x00.\x000\x00
Image resampling factor:\xff\xfe2\x00.\x000\x00
Maximum number of iterations:\xff\xfe4\x000\x00
Residual value for convergence:\xff\xfe0\x00.\x000\x000\x001\x00
CorrectIlluminationCalculate:[module_num:7|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the input image:\xff\xfeM\x00i\x00t\x00o\x00
Name the output image:\xff\xfeI\x00l\x00l\x00u\x00m\x00M\x00i\x00t\x00o\x00
Select how the illumination function is calculated:\xff\xfeR\x00e\x00g\x00u\x00l\x00a\x00r\x00
Dilate objects in the final averaged image?:\xff\xfeN\x00o\x00
Dilation radius:\xff\xfe1\x00
Block size:\xff\xfe6\x000\x00
Rescale the illumination function?:\xff\xfeY\x00e\x00s\x00
Calculate function for each image individually, or based on all images?:\xff\xfeA\x00l\x00l\x00\x3A\x00 \x00A\x00c\x00r\x00o\x00s\x00s\x00 \x00c\x00y\x00c\x00l\x00e\x00s\x00
Smoothing method:\xff\xfeG\x00a\x00u\x00s\x00s\x00i\x00a\x00n\x00 \x00F\x00i\x00l\x00t\x00e\x00r\x00
Method to calculate smoothing filter size:\xff\xfeM\x00a\x00n\x00u\x00a\x00l\x00l\x00y\x00
Approximate object diameter:\xff\xfe1\x000\x00
Smoothing filter size:\xff\xfe1\x005\x000\x00
Retain the averaged image?:\xff\xfeN\x00o\x00
Name the averaged image:\xff\xfeI\x00l\x00l\x00u\x00m\x00B\x00l\x00u\x00e\x00A\x00v\x00g\x00
Retain the dilated image?:\xff\xfeN\x00o\x00
Name the dilated image:\xff\xfeI\x00l\x00l\x00u\x00m\x00B\x00l\x00u\x00e\x00D\x00i\x00l\x00a\x00t\x00e\x00d\x00
Automatically calculate spline parameters?:\xff\xfeY\x00e\x00s\x00
Background mode:\xff\xfea\x00u\x00t\x00o\x00
Number of spline points:\xff\xfe5\x00
Background threshold:\xff\xfe2\x00.\x000\x00
Image resampling factor:\xff\xfe2\x00.\x000\x00
Maximum number of iterations:\xff\xfe4\x000\x00
Residual value for convergence:\xff\xfe0\x00.\x000\x000\x001\x00
CorrectIlluminationCalculate:[module_num:8|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the input image:\xff\xfeP\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Name the output image:\xff\xfeI\x00l\x00l\x00u\x00m\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Select how the illumination function is calculated:\xff\xfeR\x00e\x00g\x00u\x00l\x00a\x00r\x00
Dilate objects in the final averaged image?:\xff\xfeN\x00o\x00
Dilation radius:\xff\xfe1\x00
Block size:\xff\xfe6\x000\x00
Rescale the illumination function?:\xff\xfeY\x00e\x00s\x00
Calculate function for each image individually, or based on all images?:\xff\xfeA\x00l\x00l\x00\x3A\x00 \x00A\x00c\x00r\x00o\x00s\x00s\x00 \x00c\x00y\x00c\x00l\x00e\x00s\x00
Smoothing method:\xff\xfeG\x00a\x00u\x00s\x00s\x00i\x00a\x00n\x00 \x00F\x00i\x00l\x00t\x00e\x00r\x00
Method to calculate smoothing filter size:\xff\xfeM\x00a\x00n\x00u\x00a\x00l\x00l\x00y\x00
Approximate object diameter:\xff\xfe1\x000\x00
Smoothing filter size:\xff\xfe1\x005\x000\x00
Retain the averaged image?:\xff\xfeN\x00o\x00
Name the averaged image:\xff\xfeI\x00l\x00l\x00u\x00m\x00B\x00l\x00u\x00e\x00A\x00v\x00g\x00
Retain the dilated image?:\xff\xfeN\x00o\x00
Name the dilated image:\xff\xfeI\x00l\x00l\x00u\x00m\x00B\x00l\x00u\x00e\x00D\x00i\x00l\x00a\x00t\x00e\x00d\x00
Automatically calculate spline parameters?:\xff\xfeY\x00e\x00s\x00
Background mode:\xff\xfea\x00u\x00t\x00o\x00
Number of spline points:\xff\xfe5\x00
Background threshold:\xff\xfe2\x00.\x000\x00
Image resampling factor:\xff\xfe2\x00.\x000\x00
Maximum number of iterations:\xff\xfe4\x000\x00
Residual value for convergence:\xff\xfe0\x00.\x000\x000\x001\x00
CorrectIlluminationCalculate:[module_num:9|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the input image:\xff\xfeS\x00y\x00t\x00o\x00
Name the output image:\xff\xfeI\x00l\x00l\x00u\x00m\x00S\x00y\x00t\x00o\x00
Select how the illumination function is calculated:\xff\xfeR\x00e\x00g\x00u\x00l\x00a\x00r\x00
Dilate objects in the final averaged image?:\xff\xfeN\x00o\x00
Dilation radius:\xff\xfe1\x00
Block size:\xff\xfe6\x000\x00
Rescale the illumination function?:\xff\xfeY\x00e\x00s\x00
Calculate function for each image individually, or based on all images?:\xff\xfeA\x00l\x00l\x00\x3A\x00 \x00A\x00c\x00r\x00o\x00s\x00s\x00 \x00c\x00y\x00c\x00l\x00e\x00s\x00
Smoothing method:\xff\xfeG\x00a\x00u\x00s\x00s\x00i\x00a\x00n\x00 \x00F\x00i\x00l\x00t\x00e\x00r\x00
Method to calculate smoothing filter size:\xff\xfeM\x00a\x00n\x00u\x00a\x00l\x00l\x00y\x00
Approximate object diameter:\xff\xfe1\x000\x00
Smoothing filter size:\xff\xfe1\x005\x000\x00
Retain the averaged image?:\xff\xfeN\x00o\x00
Name the averaged image:\xff\xfeI\x00l\x00l\x00u\x00m\x00B\x00l\x00u\x00e\x00A\x00v\x00g\x00
Retain the dilated image?:\xff\xfeN\x00o\x00
Name the dilated image:\xff\xfeI\x00l\x00l\x00u\x00m\x00B\x00l\x00u\x00e\x00D\x00i\x00l\x00a\x00t\x00e\x00d\x00
Automatically calculate spline parameters?:\xff\xfeY\x00e\x00s\x00
Background mode:\xff\xfea\x00u\x00t\x00o\x00
Number of spline points:\xff\xfe5\x00
Background threshold:\xff\xfe2\x00.\x000\x00
Image resampling factor:\xff\xfe2\x00.\x000\x00
Maximum number of iterations:\xff\xfe4\x000\x00
Residual value for convergence:\xff\xfe0\x00.\x000\x000\x001\x00
SaveImages:[module_num:10|svn_version:\'Unknown\'|variable_revision_number:13|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the type of image to save:\xff\xfeI\x00m\x00a\x00g\x00e\x00
Select the image to save:\xff\xfeI\x00l\x00l\x00u\x00m\x00E\x00R\x00
Select method for constructing file names:\xff\xfeF\x00r\x00o\x00m\x00 \x00i\x00m\x00a\x00g\x00e\x00 \x00f\x00i\x00l\x00e\x00n\x00a\x00m\x00e\x00
Select image name for file prefix:\xff\xfeE\x00R\x00
Enter single file name:\xff\xfeO\x00r\x00i\x00g\x00B\x00l\x00u\x00e\x00
Number of digits:\xff\xfe4\x00
Append a suffix to the image file name?:\xff\xfeY\x00e\x00s\x00
Text to append to the image name:\xff\xfe_\x00i\x00l\x00l\x00u\x00m\x00
Saved file format:\xff\xfen\x00p\x00y\x00
Output file location:\xff\xfeS\x00a\x00m\x00e\x00 \x00f\x00o\x00l\x00d\x00e\x00r\x00 \x00a\x00s\x00 \x00i\x00m\x00a\x00g\x00e\x00\x7C\x00
Image bit depth:\xff\xfe8\x00-\x00b\x00i\x00t\x00 \x00i\x00n\x00t\x00e\x00g\x00e\x00r\x00
Overwrite existing files without warning?:\xff\xfeY\x00e\x00s\x00
When to save:\xff\xfeL\x00a\x00s\x00t\x00 \x00c\x00y\x00c\x00l\x00e\x00
Record the file and path information to the saved image?:\xff\xfeN\x00o\x00
Create subfolders in the output folder?:\xff\xfeN\x00o\x00
Base image folder:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
SaveImages:[module_num:11|svn_version:\'Unknown\'|variable_revision_number:13|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the type of image to save:\xff\xfeI\x00m\x00a\x00g\x00e\x00
Select the image to save:\xff\xfeI\x00l\x00l\x00u\x00m\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00
Select method for constructing file names:\xff\xfeF\x00r\x00o\x00m\x00 \x00i\x00m\x00a\x00g\x00e\x00 \x00f\x00i\x00l\x00e\x00n\x00a\x00m\x00e\x00
Select image name for file prefix:\xff\xfeH\x00o\x00e\x00c\x00h\x00s\x00t\x00
Enter single file name:\xff\xfeO\x00r\x00i\x00g\x00B\x00l\x00u\x00e\x00
Number of digits:\xff\xfe4\x00
Append a suffix to the image file name?:\xff\xfeY\x00e\x00s\x00
Text to append to the image name:\xff\xfe_\x00i\x00l\x00l\x00u\x00m\x00
Saved file format:\xff\xfen\x00p\x00y\x00
Output file location:\xff\xfeS\x00a\x00m\x00e\x00 \x00f\x00o\x00l\x00d\x00e\x00r\x00 \x00a\x00s\x00 \x00i\x00m\x00a\x00g\x00e\x00\x7C\x00
Image bit depth:\xff\xfe8\x00-\x00b\x00i\x00t\x00 \x00i\x00n\x00t\x00e\x00g\x00e\x00r\x00
Overwrite existing files without warning?:\xff\xfeY\x00e\x00s\x00
When to save:\xff\xfeL\x00a\x00s\x00t\x00 \x00c\x00y\x00c\x00l\x00e\x00
Record the file and path information to the saved image?:\xff\xfeN\x00o\x00
Create subfolders in the output folder?:\xff\xfeN\x00o\x00
Base image folder:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
SaveImages:[module_num:12|svn_version:\'Unknown\'|variable_revision_number:13|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the type of image to save:\xff\xfeI\x00m\x00a\x00g\x00e\x00
Select the image to save:\xff\xfeI\x00l\x00l\x00u\x00m\x00M\x00i\x00t\x00o\x00
Select method for constructing file names:\xff\xfeF\x00r\x00o\x00m\x00 \x00i\x00m\x00a\x00g\x00e\x00 \x00f\x00i\x00l\x00e\x00n\x00a\x00m\x00e\x00
Select image name for file prefix:\xff\xfeM\x00i\x00t\x00o\x00
Enter single file name:\xff\xfeO\x00r\x00i\x00g\x00B\x00l\x00u\x00e\x00
Number of digits:\xff\xfe4\x00
Append a suffix to the image file name?:\xff\xfeY\x00e\x00s\x00
Text to append to the image name:\xff\xfe_\x00i\x00l\x00l\x00u\x00m\x00
Saved file format:\xff\xfen\x00p\x00y\x00
Output file location:\xff\xfeS\x00a\x00m\x00e\x00 \x00f\x00o\x00l\x00d\x00e\x00r\x00 \x00a\x00s\x00 \x00i\x00m\x00a\x00g\x00e\x00\x7C\x00
Image bit depth:\xff\xfe8\x00-\x00b\x00i\x00t\x00 \x00i\x00n\x00t\x00e\x00g\x00e\x00r\x00
Overwrite existing files without warning?:\xff\xfeY\x00e\x00s\x00
When to save:\xff\xfeL\x00a\x00s\x00t\x00 \x00c\x00y\x00c\x00l\x00e\x00
Record the file and path information to the saved image?:\xff\xfeN\x00o\x00
Create subfolders in the output folder?:\xff\xfeN\x00o\x00
Base image folder:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
SaveImages:[module_num:13|svn_version:\'Unknown\'|variable_revision_number:13|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the type of image to save:\xff\xfeI\x00m\x00a\x00g\x00e\x00
Select the image to save:\xff\xfeI\x00l\x00l\x00u\x00m\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Select method for constructing file names:\xff\xfeF\x00r\x00o\x00m\x00 \x00i\x00m\x00a\x00g\x00e\x00 \x00f\x00i\x00l\x00e\x00n\x00a\x00m\x00e\x00
Select image name for file prefix:\xff\xfeP\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Enter single file name:\xff\xfeO\x00r\x00i\x00g\x00B\x00l\x00u\x00e\x00
Number of digits:\xff\xfe4\x00
Append a suffix to the image file name?:\xff\xfeY\x00e\x00s\x00
Text to append to the image name:\xff\xfe_\x00i\x00l\x00l\x00u\x00m\x00
Saved file format:\xff\xfen\x00p\x00y\x00
Output file location:\xff\xfeS\x00a\x00m\x00e\x00 \x00f\x00o\x00l\x00d\x00e\x00r\x00 \x00a\x00s\x00 \x00i\x00m\x00a\x00g\x00e\x00\x7C\x00
Image bit depth:\xff\xfe8\x00-\x00b\x00i\x00t\x00 \x00i\x00n\x00t\x00e\x00g\x00e\x00r\x00
Overwrite existing files without warning?:\xff\xfeY\x00e\x00s\x00
When to save:\xff\xfeL\x00a\x00s\x00t\x00 \x00c\x00y\x00c\x00l\x00e\x00
Record the file and path information to the saved image?:\xff\xfeN\x00o\x00
Create subfolders in the output folder?:\xff\xfeN\x00o\x00
Base image folder:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
SaveImages:[module_num:14|svn_version:\'Unknown\'|variable_revision_number:13|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the type of image to save:\xff\xfeI\x00m\x00a\x00g\x00e\x00
Select the image to save:\xff\xfeI\x00l\x00l\x00u\x00m\x00S\x00y\x00t\x00o\x00
Select method for constructing file names:\xff\xfeF\x00r\x00o\x00m\x00 \x00i\x00m\x00a\x00g\x00e\x00 \x00f\x00i\x00l\x00e\x00n\x00a\x00m\x00e\x00
Select image name for file prefix:\xff\xfeS\x00y\x00t\x00o\x00
Enter single file name:\xff\xfeO\x00r\x00i\x00g\x00B\x00l\x00u\x00e\x00
Number of digits:\xff\xfe4\x00
Append a suffix to the image file name?:\xff\xfeY\x00e\x00s\x00
Text to append to the image name:\xff\xfe_\x00i\x00l\x00l\x00u\x00m\x00
Saved file format:\xff\xfen\x00p\x00y\x00
Output file location:\xff\xfeS\x00a\x00m\x00e\x00 \x00f\x00o\x00l\x00d\x00e\x00r\x00 \x00a\x00s\x00 \x00i\x00m\x00a\x00g\x00e\x00\x7C\x00
Image bit depth:\xff\xfe8\x00-\x00b\x00i\x00t\x00 \x00i\x00n\x00t\x00e\x00g\x00e\x00r\x00
Overwrite existing files without warning?:\xff\xfeY\x00e\x00s\x00
When to save:\xff\xfeL\x00a\x00s\x00t\x00 \x00c\x00y\x00c\x00l\x00e\x00
Record the file and path information to the saved image?:\xff\xfeN\x00o\x00
Create subfolders in the output folder?:\xff\xfeN\x00o\x00
Base image folder:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00