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BBBC022_QCStepsSubset.cppipe
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CellProfiler Pipeline: http://www.cellprofiler.org
Version:4
DateRevision:315
GitHash:
ModuleCount:12
HasImagePlaneDetails:False
Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
:\xff\xfe
Filter images?:\xff\xfeC\x00u\x00s\x00t\x00o\x00m\x00
Select the rule criteria:\xff\xfeo\x00r\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00c\x00o\x00n\x00t\x00a\x00i\x00n\x00 \x00"\x00.\x00n\x00p\x00y\x00"\x00)\x00 \x00(\x00e\x00x\x00t\x00e\x00n\x00s\x00i\x00o\x00n\x00 \x00d\x00o\x00e\x00s\x00 \x00i\x00s\x00t\x00i\x00f\x00)\x00
Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:5|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Extract metadata?:\xff\xfeY\x00e\x00s\x00
Metadata data type:\xff\xfeT\x00e\x00x\x00t\x00
Metadata types:\xff\xfe{\x00}\x00
Extraction method count:\xff\xfe4\x00
Metadata extraction method:\xff\xfeE\x00x\x00t\x00r\x00a\x00c\x00t\x00 \x00f\x00r\x00o\x00m\x00 \x00f\x00i\x00l\x00e\x00/\x00f\x00o\x00l\x00d\x00e\x00r\x00 \x00n\x00a\x00m\x00e\x00s\x00
Metadata source:\xff\xfeF\x00i\x00l\x00e\x00 \x00n\x00a\x00m\x00e\x00
Regular expression to extract from file name:\xff\xfe^\x00.\x00*\x00_\x00(\x00?\x00P\x00<\x00W\x00e\x00l\x00l\x00>\x00\x5B\x00A\x00-\x00P\x00\x5D\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00_\x00s\x00(\x00?\x00P\x00<\x00S\x00i\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00_\x00w\x00(\x00?\x00P\x00<\x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00
Regular expression to extract from folder name:\xff\xfe(\x00?\x00P\x00<\x00D\x00a\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x004\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00$\x00
Extract metadata from:\xff\xfeI\x00m\x00a\x00g\x00e\x00s\x00 \x00m\x00a\x00t\x00c\x00h\x00i\x00n\x00g\x00 \x00a\x00 \x00r\x00u\x00l\x00e\x00
Select the filtering criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00e\x00x\x00t\x00e\x00n\x00s\x00i\x00o\x00n\x00 \x00d\x00o\x00e\x00s\x00 \x00i\x00s\x00t\x00i\x00f\x00)\x00
Metadata file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Match file and image metadata:\xff\xfe\x5B\x00\x5D\x00
Use case insensitive matching?:\xff\xfeN\x00o\x00
Metadata file name:\xff\xfeN\x00o\x00n\x00e\x00
Metadata extraction method:\xff\xfeE\x00x\x00t\x00r\x00a\x00c\x00t\x00 \x00f\x00r\x00o\x00m\x00 \x00f\x00i\x00l\x00e\x00/\x00f\x00o\x00l\x00d\x00e\x00r\x00 \x00n\x00a\x00m\x00e\x00s\x00
Metadata source:\xff\xfeF\x00o\x00l\x00d\x00e\x00r\x00 \x00n\x00a\x00m\x00e\x00
Regular expression to extract from file name:\xff\xfe^\x00(\x00?\x00P\x00<\x00P\x00l\x00a\x00t\x00e\x00>\x00.\x00*\x00)\x00_\x00(\x00?\x00P\x00<\x00W\x00e\x00l\x00l\x00>\x00\x5B\x00A\x00-\x00P\x00\x5D\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00_\x00s\x00(\x00?\x00P\x00<\x00S\x00i\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00_\x00w\x00(\x00?\x00P\x00<\x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00
Regular expression to extract from folder name:\xff\xfe(\x00?\x00P\x00<\x00P\x00l\x00a\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x005\x00}\x00)\x00
Extract metadata from:\xff\xfeA\x00l\x00l\x00 \x00i\x00m\x00a\x00g\x00e\x00s\x00
Select the filtering criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00c\x00o\x00n\x00t\x00a\x00i\x00n\x00 \x00"\x00"\x00)\x00
Metadata file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Match file and image metadata:\xff\xfe\x5B\x00\x5D\x00
Use case insensitive matching?:\xff\xfeN\x00o\x00
Metadata file name:\xff\xfeN\x00o\x00n\x00e\x00
Metadata extraction method:\xff\xfeI\x00m\x00p\x00o\x00r\x00t\x00 \x00f\x00r\x00o\x00m\x00 \x00f\x00i\x00l\x00e\x00
Metadata source:\xff\xfeF\x00o\x00l\x00d\x00e\x00r\x00 \x00n\x00a\x00m\x00e\x00
Regular expression to extract from file name:\xff\xfe^\x00(\x00?\x00P\x00<\x00P\x00l\x00a\x00t\x00e\x00>\x00.\x00*\x00)\x00_\x00(\x00?\x00P\x00<\x00W\x00e\x00l\x00l\x00>\x00\x5B\x00A\x00-\x00P\x00\x5D\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00_\x00s\x00(\x00?\x00P\x00<\x00S\x00i\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00_\x00w\x00(\x00?\x00P\x00<\x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00
Regular expression to extract from folder name:\xff\xfe(\x00?\x00P\x00<\x00D\x00a\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x004\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00$\x00
Extract metadata from:\xff\xfeI\x00m\x00a\x00g\x00e\x00s\x00 \x00m\x00a\x00t\x00c\x00h\x00i\x00n\x00g\x00 \x00a\x00 \x00r\x00u\x00l\x00e\x00
Select the filtering criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00e\x00x\x00t\x00e\x00n\x00s\x00i\x00o\x00n\x00 \x00d\x00o\x00e\x00s\x00 \x00i\x00s\x00t\x00i\x00f\x00)\x00
Metadata file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00D\x00\x3A\x00\\\x00B\x00B\x00B\x00C\x000\x002\x002\x00
Match file and image metadata:\xff\xfe\x5B\x00{\x00\'\x00I\x00m\x00a\x00g\x00e\x00 \x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00\'\x00C\x00S\x00V\x00 \x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00\'\x00\x3A\x00 \x00u\x00\'\x00I\x00m\x00a\x00g\x00e\x00_\x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00_\x00P\x00l\x00a\x00t\x00e\x00I\x00D\x00\'\x00}\x00,\x00 \x00{\x00\'\x00I\x00m\x00a\x00g\x00e\x00 \x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00\'\x00\x3A\x00 \x00u\x00\'\x00S\x00i\x00t\x00e\x00\'\x00,\x00 \x00\'\x00C\x00S\x00V\x00 \x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00\'\x00\x3A\x00 \x00u\x00\'\x00I\x00m\x00a\x00g\x00e\x00_\x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00_\x00S\x00i\x00t\x00e\x00\'\x00}\x00,\x00 \x00{\x00\'\x00I\x00m\x00a\x00g\x00e\x00 \x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00\'\x00\x3A\x00 \x00u\x00\'\x00W\x00e\x00l\x00l\x00\'\x00,\x00 \x00\'\x00C\x00S\x00V\x00 \x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00\'\x00\x3A\x00 \x00u\x00\'\x00I\x00m\x00a\x00g\x00e\x00_\x00M\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00_\x00C\x00P\x00D\x00_\x00W\x00E\x00L\x00L\x00_\x00P\x00O\x00S\x00I\x00T\x00I\x00O\x00N\x00\'\x00}\x00\x5D\x00
Use case insensitive matching?:\xff\xfeN\x00o\x00
Metadata file name:\xff\xfeB\x00B\x00B\x00C\x000\x002\x002\x00_\x00v\x001\x00_\x00i\x00m\x00a\x00g\x00e\x00.\x00c\x00s\x00v\x00
Metadata extraction method:\xff\xfeE\x00x\x00t\x00r\x00a\x00c\x00t\x00 \x00f\x00r\x00o\x00m\x00 \x00f\x00i\x00l\x00e\x00/\x00f\x00o\x00l\x00d\x00e\x00r\x00 \x00n\x00a\x00m\x00e\x00s\x00
Metadata source:\xff\xfeF\x00i\x00l\x00e\x00 \x00n\x00a\x00m\x00e\x00
Regular expression to extract from file name:\xff\xfe^\x00.\x00*\x00_\x00w\x00(\x00?\x00P\x00<\x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00)\x00
Regular expression to extract from folder name:\xff\xfe(\x00?\x00P\x00<\x00D\x00a\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x004\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00$\x00
Extract metadata from:\xff\xfeI\x00m\x00a\x00g\x00e\x00s\x00 \x00m\x00a\x00t\x00c\x00h\x00i\x00n\x00g\x00 \x00a\x00 \x00r\x00u\x00l\x00e\x00
Select the filtering criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00e\x00n\x00d\x00w\x00i\x00t\x00h\x00 \x00"\x00.\x00n\x00p\x00y\x00"\x00)\x00
Metadata file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Match file and image metadata:\xff\xfe\x5B\x00\x5D\x00
Use case insensitive matching?:\xff\xfeN\x00o\x00
Metadata file name:\xff\xfeN\x00o\x00n\x00e\x00
NamesAndTypes:[module_num:3|svn_version:\'Unknown\'|variable_revision_number:8|show_window:False|notes:\x5B\'The NamesAndTypes module allows you to assign a meaningful name to each image by which other modules will refer to it.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Assign a name to:\xff\xfeI\x00m\x00a\x00g\x00e\x00s\x00 \x00m\x00a\x00t\x00c\x00h\x00i\x00n\x00g\x00 \x00r\x00u\x00l\x00e\x00s\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Name to assign these images:\xff\xfeD\x00N\x00A\x00
Match metadata:\xff\xfe\x5B\x00{\x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00M\x00i\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00E\x00R\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00M\x00i\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00S\x00y\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00S\x00y\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00E\x00R\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00\'\x00\x3A\x00 \x00u\x00\'\x00P\x00l\x00a\x00t\x00e\x00\'\x00}\x00,\x00 \x00{\x00u\x00\'\x00M\x00i\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00W\x00e\x00l\x00l\x00\'\x00,\x00 \x00u\x00\'\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00\'\x00\x3A\x00 \x00u\x00\'\x00W\x00e\x00l\x00l\x00\'\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00M\x00i\x00t\x00o\x00\'\x00\x3A\x00 \x00N\x00o\x00n\x00e\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00E\x00R\x00\'\x00\x3A\x00 \x00N\x00o\x00n\x00e\x00,\x00 \x00u\x00\'\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00\'\x00\x3A\x00 \x00u\x00\'\x00W\x00e\x00l\x00l\x00\'\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00S\x00y\x00t\x00o\x00\'\x00\x3A\x00 \x00N\x00o\x00n\x00e\x00,\x00 \x00u\x00\'\x00S\x00y\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00W\x00e\x00l\x00l\x00\'\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00\'\x00\x3A\x00 \x00N\x00o\x00n\x00e\x00,\x00 \x00u\x00\'\x00E\x00R\x00\'\x00\x3A\x00 \x00u\x00\'\x00W\x00e\x00l\x00l\x00\'\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00\'\x00\x3A\x00 \x00N\x00o\x00n\x00e\x00}\x00,\x00 \x00{\x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00M\x00i\x00t\x00o\x00\'\x00\x3A\x00 \x00N\x00o\x00n\x00e\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00\'\x00\x3A\x00 \x00N\x00o\x00n\x00e\x00,\x00 \x00u\x00\'\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00\'\x00\x3A\x00 \x00u\x00\'\x00S\x00i\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00E\x00R\x00\'\x00\x3A\x00 \x00N\x00o\x00n\x00e\x00,\x00 \x00u\x00\'\x00M\x00i\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00S\x00i\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00\'\x00\x3A\x00 \x00N\x00o\x00n\x00e\x00,\x00 \x00u\x00\'\x00I\x00l\x00l\x00u\x00m\x00S\x00y\x00t\x00o\x00\'\x00\x3A\x00 \x00N\x00o\x00n\x00e\x00,\x00 \x00u\x00\'\x00S\x00y\x00t\x00o\x00\'\x00\x3A\x00 \x00u\x00\'\x00S\x00i\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00\'\x00\x3A\x00 \x00u\x00\'\x00S\x00i\x00t\x00e\x00\'\x00,\x00 \x00u\x00\'\x00E\x00R\x00\'\x00\x3A\x00 \x00u\x00\'\x00S\x00i\x00t\x00e\x00\'\x00}\x00\x5D\x00
Image set matching method:\xff\xfeM\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Assignments count:\xff\xfe1\x000\x00
Single images count:\xff\xfe0\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Process as 3D?:\xff\xfeN\x00o\x00
Relative pixel spacing in X:\xff\xfe1\x00.\x000\x00
Relative pixel spacing in Y:\xff\xfe1\x00.\x000\x00
Relative pixel spacing in Z:\xff\xfe1\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x001\x00"\x00)\x00 \x00(\x00e\x00x\x00t\x00e\x00n\x00s\x00i\x00o\x00n\x00 \x00d\x00o\x00e\x00s\x00 \x00i\x00s\x00t\x00i\x00f\x00)\x00
Name to assign these images:\xff\xfeH\x00o\x00e\x00c\x00h\x00s\x00t\x00
Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x002\x00"\x00)\x00 \x00(\x00e\x00x\x00t\x00e\x00n\x00s\x00i\x00o\x00n\x00 \x00d\x00o\x00e\x00s\x00 \x00i\x00s\x00t\x00i\x00f\x00)\x00
Name to assign these images:\xff\xfeE\x00R\x00
Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x003\x00"\x00)\x00 \x00(\x00e\x00x\x00t\x00e\x00n\x00s\x00i\x00o\x00n\x00 \x00d\x00o\x00e\x00s\x00 \x00i\x00s\x00t\x00i\x00f\x00)\x00
Name to assign these images:\xff\xfeS\x00y\x00t\x00o\x00
Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x004\x00"\x00)\x00 \x00(\x00e\x00x\x00t\x00e\x00n\x00s\x00i\x00o\x00n\x00 \x00d\x00o\x00e\x00s\x00 \x00i\x00s\x00t\x00i\x00f\x00)\x00
Name to assign these images:\xff\xfeP\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x005\x00"\x00)\x00 \x00(\x00e\x00x\x00t\x00e\x00n\x00s\x00i\x00o\x00n\x00 \x00d\x00o\x00e\x00s\x00 \x00i\x00s\x00t\x00i\x00f\x00)\x00
Name to assign these images:\xff\xfeM\x00i\x00t\x00o\x00
Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00e\x00n\x00d\x00w\x00i\x00t\x00h\x00 \x00"\x00.\x00n\x00p\x00y\x00"\x00)\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x001\x00"\x00)\x00
Name to assign these images:\xff\xfeI\x00l\x00l\x00u\x00m\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00
Name to assign these objects:\xff\xfeN\x00u\x00c\x00l\x00e\x00u\x00s\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00e\x00n\x00d\x00w\x00i\x00t\x00h\x00 \x00"\x00.\x00n\x00p\x00y\x00"\x00)\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x002\x00"\x00)\x00
Name to assign these images:\xff\xfeI\x00l\x00l\x00u\x00m\x00E\x00R\x00
Name to assign these objects:\xff\xfeN\x00u\x00c\x00l\x00e\x00u\x00s\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00e\x00n\x00d\x00w\x00i\x00t\x00h\x00 \x00"\x00.\x00n\x00p\x00y\x00"\x00)\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x003\x00"\x00)\x00
Name to assign these images:\xff\xfeI\x00l\x00l\x00u\x00m\x00S\x00y\x00t\x00o\x00
Name to assign these objects:\xff\xfeN\x00u\x00c\x00l\x00e\x00u\x00s\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00e\x00n\x00d\x00w\x00i\x00t\x00h\x00 \x00"\x00.\x00n\x00p\x00y\x00"\x00)\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x004\x00"\x00)\x00
Name to assign these images:\xff\xfeI\x00l\x00l\x00u\x00m\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Name to assign these objects:\xff\xfeN\x00u\x00c\x00l\x00e\x00u\x00s\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00e\x00n\x00d\x00w\x00i\x00t\x00h\x00 \x00"\x00.\x00n\x00p\x00y\x00"\x00)\x00 \x00(\x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00 \x00d\x00o\x00e\x00s\x00 \x00C\x00h\x00a\x00n\x00n\x00e\x00l\x00N\x00u\x00m\x00b\x00e\x00r\x00 \x00"\x005\x00"\x00)\x00
Name to assign these images:\xff\xfeI\x00l\x00l\x00u\x00m\x00M\x00i\x00t\x00o\x00
Name to assign these objects:\xff\xfeN\x00u\x00c\x00l\x00e\x00u\x00s\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Groups:[module_num:4|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'The Groups module optionally allows you to split your list of images into image subsets (groups) which will be processed independently of each other. Examples of groupings include screening batches, microtiter plates, time-lapse movies, etc.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Do you want to group your images?:\xff\xfeY\x00e\x00s\x00
grouping metadata count:\xff\xfe1\x00
Metadata category:\xff\xfeS\x00i\x00t\x00e\x00
CorrectIlluminationApply:[module_num:5|svn_version:\'Unknown\'|variable_revision_number:3|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the input image:\xff\xfeH\x00o\x00e\x00c\x00h\x00s\x00t\x00
Name the output image:\xff\xfeC\x00o\x00r\x00r\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00
Select the illumination function:\xff\xfeI\x00l\x00l\x00u\x00m\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00
Select how the illumination function is applied:\xff\xfeD\x00i\x00v\x00i\x00d\x00e\x00
Select the input image:\xff\xfeE\x00R\x00
Name the output image:\xff\xfeC\x00o\x00r\x00r\x00E\x00R\x00
Select the illumination function:\xff\xfeI\x00l\x00l\x00u\x00m\x00E\x00R\x00
Select how the illumination function is applied:\xff\xfeD\x00i\x00v\x00i\x00d\x00e\x00
Select the input image:\xff\xfeM\x00i\x00t\x00o\x00
Name the output image:\xff\xfeC\x00o\x00r\x00r\x00M\x00i\x00t\x00o\x00
Select the illumination function:\xff\xfeI\x00l\x00l\x00u\x00m\x00M\x00i\x00t\x00o\x00
Select how the illumination function is applied:\xff\xfeD\x00i\x00v\x00i\x00d\x00e\x00
Select the input image:\xff\xfeP\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Name the output image:\xff\xfeC\x00o\x00r\x00r\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Select the illumination function:\xff\xfeI\x00l\x00l\x00u\x00m\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Select how the illumination function is applied:\xff\xfeD\x00i\x00v\x00i\x00d\x00e\x00
Select the input image:\xff\xfeS\x00y\x00t\x00o\x00
Name the output image:\xff\xfeC\x00o\x00r\x00r\x00S\x00y\x00t\x00o\x00
Select the illumination function:\xff\xfeI\x00l\x00l\x00u\x00m\x00S\x00y\x00t\x00o\x00
Select how the illumination function is applied:\xff\xfeD\x00i\x00v\x00i\x00d\x00e\x00
MeasureImageQuality:[module_num:6|svn_version:\'Unknown\'|variable_revision_number:5|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Calculate metrics for which images?:\xff\xfeA\x00l\x00l\x00 \x00l\x00o\x00a\x00d\x00e\x00d\x00 \x00i\x00m\x00a\x00g\x00e\x00s\x00
Image count:\xff\xfe1\x00
Scale count:\xff\xfe6\x00
Threshold count:\xff\xfe1\x00
Select the images to measure:\xff\xfe
Include the image rescaling value?:\xff\xfeY\x00e\x00s\x00
Calculate blur metrics?:\xff\xfeY\x00e\x00s\x00
Spatial scale for blur measurements:\xff\xfe2\x000\x00
Spatial scale for blur measurements:\xff\xfe4\x000\x00
Spatial scale for blur measurements:\xff\xfe6\x000\x00
Spatial scale for blur measurements:\xff\xfe2\x00
Spatial scale for blur measurements:\xff\xfe5\x00
Spatial scale for blur measurements:\xff\xfe1\x000\x00
Calculate saturation metrics?:\xff\xfeY\x00e\x00s\x00
Calculate intensity metrics?:\xff\xfeY\x00e\x00s\x00
Calculate thresholds?:\xff\xfeN\x00o\x00
Use all thresholding methods?:\xff\xfeN\x00o\x00
Select a thresholding method:\xff\xfeO\x00t\x00s\x00u\x00
Typical fraction of the image covered by objects:\xff\xfe0\x00.\x001\x00
Two-class or three-class thresholding?:\xff\xfeT\x00w\x00o\x00 \x00c\x00l\x00a\x00s\x00s\x00e\x00s\x00
Minimize the weighted variance or the entropy?:\xff\xfeW\x00e\x00i\x00g\x00h\x00t\x00e\x00d\x00 \x00v\x00a\x00r\x00i\x00a\x00n\x00c\x00e\x00
Assign pixels in the middle intensity class to the foreground or the background?:\xff\xfeF\x00o\x00r\x00e\x00g\x00r\x00o\x00u\x00n\x00d\x00
FlagImage:[module_num:7|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Hidden:\xff\xfe2\x00
Hidden:\xff\xfe5\x00
Name the flag\'s category:\xff\xfeM\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Name the flag:\xff\xfeQ\x00C\x00F\x00l\x00a\x00g\x00_\x00i\x00s\x00S\x00a\x00t\x00u\x00r\x00a\x00t\x00e\x00d\x00
How should measurements be linked?:\xff\xfeF\x00l\x00a\x00g\x00 \x00i\x00f\x00 \x00a\x00n\x00y\x00 \x00f\x00a\x00i\x00l\x00
Skip image set if flagged?:\xff\xfeN\x00o\x00
Flag is based on:\xff\xfeW\x00h\x00o\x00l\x00e\x00-\x00i\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00a\x00s\x00u\x00r\x00e\x00m\x00e\x00n\x00t\x00
Select the object to be used for flagging:\xff\xfeN\x00o\x00n\x00e\x00
Which measurement?:\xff\xfeI\x00m\x00a\x00g\x00e\x00Q\x00u\x00a\x00l\x00i\x00t\x00y\x00_\x00P\x00e\x00r\x00c\x00e\x00n\x00t\x00M\x00a\x00x\x00i\x00m\x00a\x00l\x00_\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00
Flag images based on low values?:\xff\xfeN\x00o\x00
Minimum value:\xff\xfe0\x00.\x000\x00
Flag images based on high values?:\xff\xfeY\x00e\x00s\x00
Maximum value:\xff\xfe0\x00.\x002\x005\x00
Rules file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Rules file name:\xff\xfer\x00u\x00l\x00e\x00s\x00.\x00t\x00x\x00t\x00
Class number:\xff\xfe
Flag is based on:\xff\xfeW\x00h\x00o\x00l\x00e\x00-\x00i\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00a\x00s\x00u\x00r\x00e\x00m\x00e\x00n\x00t\x00
Select the object to be used for flagging:\xff\xfeN\x00o\x00n\x00e\x00
Which measurement?:\xff\xfeI\x00m\x00a\x00g\x00e\x00Q\x00u\x00a\x00l\x00i\x00t\x00y\x00_\x00P\x00e\x00r\x00c\x00e\x00n\x00t\x00M\x00a\x00x\x00i\x00m\x00a\x00l\x00_\x00E\x00R\x00
Flag images based on low values?:\xff\xfeN\x00o\x00
Minimum value:\xff\xfe0\x00.\x000\x00
Flag images based on high values?:\xff\xfeY\x00e\x00s\x00
Maximum value:\xff\xfe0\x00.\x002\x005\x00
Rules file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Rules file name:\xff\xfer\x00u\x00l\x00e\x00s\x00.\x00t\x00x\x00t\x00
Class number:\xff\xfe
Flag is based on:\xff\xfeW\x00h\x00o\x00l\x00e\x00-\x00i\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00a\x00s\x00u\x00r\x00e\x00m\x00e\x00n\x00t\x00
Select the object to be used for flagging:\xff\xfeN\x00o\x00n\x00e\x00
Which measurement?:\xff\xfeI\x00m\x00a\x00g\x00e\x00Q\x00u\x00a\x00l\x00i\x00t\x00y\x00_\x00P\x00e\x00r\x00c\x00e\x00n\x00t\x00M\x00a\x00x\x00i\x00m\x00a\x00l\x00_\x00M\x00i\x00t\x00o\x00
Flag images based on low values?:\xff\xfeN\x00o\x00
Minimum value:\xff\xfe0\x00.\x000\x00
Flag images based on high values?:\xff\xfeY\x00e\x00s\x00
Maximum value:\xff\xfe.\x002\x005\x00
Rules file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Rules file name:\xff\xfer\x00u\x00l\x00e\x00s\x00.\x00t\x00x\x00t\x00
Class number:\xff\xfe
Flag is based on:\xff\xfeW\x00h\x00o\x00l\x00e\x00-\x00i\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00a\x00s\x00u\x00r\x00e\x00m\x00e\x00n\x00t\x00
Select the object to be used for flagging:\xff\xfeN\x00o\x00n\x00e\x00
Which measurement?:\xff\xfeI\x00m\x00a\x00g\x00e\x00Q\x00u\x00a\x00l\x00i\x00t\x00y\x00_\x00P\x00e\x00r\x00c\x00e\x00n\x00t\x00M\x00a\x00x\x00i\x00m\x00a\x00l\x00_\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Flag images based on low values?:\xff\xfeN\x00o\x00
Minimum value:\xff\xfe0\x00.\x000\x00
Flag images based on high values?:\xff\xfeY\x00e\x00s\x00
Maximum value:\xff\xfe0\x00.\x002\x005\x00
Rules file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Rules file name:\xff\xfer\x00u\x00l\x00e\x00s\x00.\x00t\x00x\x00t\x00
Class number:\xff\xfe
Flag is based on:\xff\xfeW\x00h\x00o\x00l\x00e\x00-\x00i\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00a\x00s\x00u\x00r\x00e\x00m\x00e\x00n\x00t\x00
Select the object to be used for flagging:\xff\xfeN\x00o\x00n\x00e\x00
Which measurement?:\xff\xfeI\x00m\x00a\x00g\x00e\x00Q\x00u\x00a\x00l\x00i\x00t\x00y\x00_\x00P\x00e\x00r\x00c\x00e\x00n\x00t\x00M\x00a\x00x\x00i\x00m\x00a\x00l\x00_\x00S\x00y\x00t\x00o\x00
Flag images based on low values?:\xff\xfeN\x00o\x00
Minimum value:\xff\xfe0\x00.\x000\x00
Flag images based on high values?:\xff\xfeY\x00e\x00s\x00
Maximum value:\xff\xfe0\x00.\x002\x005\x00
Rules file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Rules file name:\xff\xfer\x00u\x00l\x00e\x00s\x00.\x00t\x00x\x00t\x00
Class number:\xff\xfe
Hidden:\xff\xfe5\x00
Name the flag\'s category:\xff\xfeM\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Name the flag:\xff\xfeQ\x00C\x00F\x00l\x00a\x00g\x00_\x00i\x00s\x00B\x00l\x00u\x00r\x00r\x00y\x00
How should measurements be linked?:\xff\xfeF\x00l\x00a\x00g\x00 \x00i\x00f\x00 \x00a\x00n\x00y\x00 \x00f\x00a\x00i\x00l\x00
Skip image set if flagged?:\xff\xfeN\x00o\x00
Flag is based on:\xff\xfeW\x00h\x00o\x00l\x00e\x00-\x00i\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00a\x00s\x00u\x00r\x00e\x00m\x00e\x00n\x00t\x00
Select the object to be used for flagging:\xff\xfeN\x00o\x00n\x00e\x00
Which measurement?:\xff\xfeI\x00m\x00a\x00g\x00e\x00Q\x00u\x00a\x00l\x00i\x00t\x00y\x00_\x00P\x00o\x00w\x00e\x00r\x00L\x00o\x00g\x00L\x00o\x00g\x00S\x00l\x00o\x00p\x00e\x00_\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00
Flag images based on low values?:\xff\xfeY\x00e\x00s\x00
Minimum value:\xff\xfe-\x002\x00.\x000\x00
Flag images based on high values?:\xff\xfeN\x00o\x00
Maximum value:\xff\xfe1\x00.\x000\x00
Rules file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Rules file name:\xff\xfer\x00u\x00l\x00e\x00s\x00.\x00t\x00x\x00t\x00
Class number:\xff\xfe
Flag is based on:\xff\xfeW\x00h\x00o\x00l\x00e\x00-\x00i\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00a\x00s\x00u\x00r\x00e\x00m\x00e\x00n\x00t\x00
Select the object to be used for flagging:\xff\xfeN\x00o\x00n\x00e\x00
Which measurement?:\xff\xfeI\x00m\x00a\x00g\x00e\x00Q\x00u\x00a\x00l\x00i\x00t\x00y\x00_\x00P\x00o\x00w\x00e\x00r\x00L\x00o\x00g\x00L\x00o\x00g\x00S\x00l\x00o\x00p\x00e\x00_\x00E\x00R\x00
Flag images based on low values?:\xff\xfeY\x00e\x00s\x00
Minimum value:\xff\xfe-\x002\x00.\x000\x00
Flag images based on high values?:\xff\xfeN\x00o\x00
Maximum value:\xff\xfe1\x00.\x000\x00
Rules file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Rules file name:\xff\xfer\x00u\x00l\x00e\x00s\x00.\x00t\x00x\x00t\x00
Class number:\xff\xfe
Flag is based on:\xff\xfeW\x00h\x00o\x00l\x00e\x00-\x00i\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00a\x00s\x00u\x00r\x00e\x00m\x00e\x00n\x00t\x00
Select the object to be used for flagging:\xff\xfeN\x00o\x00n\x00e\x00
Which measurement?:\xff\xfeI\x00m\x00a\x00g\x00e\x00Q\x00u\x00a\x00l\x00i\x00t\x00y\x00_\x00P\x00o\x00w\x00e\x00r\x00L\x00o\x00g\x00L\x00o\x00g\x00S\x00l\x00o\x00p\x00e\x00_\x00M\x00i\x00t\x00o\x00
Flag images based on low values?:\xff\xfeY\x00e\x00s\x00
Minimum value:\xff\xfe-\x002\x00.\x000\x00
Flag images based on high values?:\xff\xfeN\x00o\x00
Maximum value:\xff\xfe1\x00.\x000\x00
Rules file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Rules file name:\xff\xfer\x00u\x00l\x00e\x00s\x00.\x00t\x00x\x00t\x00
Class number:\xff\xfe
Flag is based on:\xff\xfeW\x00h\x00o\x00l\x00e\x00-\x00i\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00a\x00s\x00u\x00r\x00e\x00m\x00e\x00n\x00t\x00
Select the object to be used for flagging:\xff\xfeN\x00o\x00n\x00e\x00
Which measurement?:\xff\xfeI\x00m\x00a\x00g\x00e\x00Q\x00u\x00a\x00l\x00i\x00t\x00y\x00_\x00P\x00o\x00w\x00e\x00r\x00L\x00o\x00g\x00L\x00o\x00g\x00S\x00l\x00o\x00p\x00e\x00_\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Flag images based on low values?:\xff\xfeY\x00e\x00s\x00
Minimum value:\xff\xfe-\x002\x00.\x000\x00
Flag images based on high values?:\xff\xfeN\x00o\x00
Maximum value:\xff\xfe1\x00.\x000\x00
Rules file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Rules file name:\xff\xfer\x00u\x00l\x00e\x00s\x00.\x00t\x00x\x00t\x00
Class number:\xff\xfe
Flag is based on:\xff\xfeW\x00h\x00o\x00l\x00e\x00-\x00i\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00a\x00s\x00u\x00r\x00e\x00m\x00e\x00n\x00t\x00
Select the object to be used for flagging:\xff\xfeN\x00o\x00n\x00e\x00
Which measurement?:\xff\xfeI\x00m\x00a\x00g\x00e\x00Q\x00u\x00a\x00l\x00i\x00t\x00y\x00_\x00P\x00o\x00w\x00e\x00r\x00L\x00o\x00g\x00L\x00o\x00g\x00S\x00l\x00o\x00p\x00e\x00_\x00S\x00y\x00t\x00o\x00
Flag images based on low values?:\xff\xfeY\x00e\x00s\x00
Minimum value:\xff\xfe-\x002\x00.\x000\x00
Flag images based on high values?:\xff\xfeN\x00o\x00
Maximum value:\xff\xfe1\x00.\x000\x00
Rules file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Rules file name:\xff\xfer\x00u\x00l\x00e\x00s\x00.\x00t\x00x\x00t\x00
Class number:\xff\xfe
IdentifyPrimaryObjects:[module_num:8|svn_version:\'Unknown\'|variable_revision_number:13|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the input image:\xff\xfeC\x00o\x00r\x00r\x00H\x00o\x00e\x00c\x00h\x00s\x00t\x00
Name the primary objects to be identified:\xff\xfeN\x00u\x00c\x00l\x00e\x00i\x00
Typical diameter of objects, in pixel units (Min,Max):\xff\xfe1\x005\x00,\x001\x002\x000\x00
Discard objects outside the diameter range?:\xff\xfeY\x00e\x00s\x00
Discard objects touching the border of the image?:\xff\xfeY\x00e\x00s\x00
Method to distinguish clumped objects:\xff\xfeI\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00
Method to draw dividing lines between clumped objects:\xff\xfeS\x00h\x00a\x00p\x00e\x00
Size of smoothing filter:\xff\xfe1\x000\x00
Suppress local maxima that are closer than this minimum allowed distance:\xff\xfe7\x00.\x000\x00
Speed up by using lower-resolution image to find local maxima?:\xff\xfeN\x00o\x00
Fill holes in identified objects?:\xff\xfeA\x00f\x00t\x00e\x00r\x00 \x00b\x00o\x00t\x00h\x00 \x00t\x00h\x00r\x00e\x00s\x00h\x00o\x00l\x00d\x00i\x00n\x00g\x00 \x00a\x00n\x00d\x00 \x00d\x00e\x00c\x00l\x00u\x00m\x00p\x00i\x00n\x00g\x00
Automatically calculate size of smoothing filter for declumping?:\xff\xfeY\x00e\x00s\x00
Automatically calculate minimum allowed distance between local maxima?:\xff\xfeY\x00e\x00s\x00
Handling of objects if excessive number of objects identified:\xff\xfeC\x00o\x00n\x00t\x00i\x00n\x00u\x00e\x00
Maximum number of objects:\xff\xfe5\x000\x000\x00
Use advanced settings?:\xff\xfeY\x00e\x00s\x00
Threshold setting version:\xff\xfe1\x000\x00
Threshold strategy:\xff\xfeG\x00l\x00o\x00b\x00a\x00l\x00
Thresholding method:\xff\xfeO\x00t\x00s\x00u\x00
Threshold smoothing scale:\xff\xfe2\x00
Threshold correction factor:\xff\xfe1\x00
Lower and upper bounds on threshold:\xff\xfe0\x00.\x000\x00,\x001\x00.\x000\x00
Manual threshold:\xff\xfe0\x00.\x000\x00
Select the measurement to threshold with:\xff\xfeN\x00o\x00n\x00e\x00
Two-class or three-class thresholding?:\xff\xfeT\x00w\x00o\x00 \x00c\x00l\x00a\x00s\x00s\x00e\x00s\x00
Assign pixels in the middle intensity class to the foreground or the background?:\xff\xfeB\x00a\x00c\x00k\x00g\x00r\x00o\x00u\x00n\x00d\x00
Size of adaptive window:\xff\xfe5\x000\x00
Lower outlier fraction:\xff\xfe0\x00.\x000\x005\x00
Upper outlier fraction:\xff\xfe0\x00.\x000\x005\x00
Averaging method:\xff\xfeM\x00e\x00a\x00n\x00
Variance method:\xff\xfeS\x00t\x00a\x00n\x00d\x00a\x00r\x00d\x00 \x00d\x00e\x00v\x00i\x00a\x00t\x00i\x00o\x00n\x00
# of deviations:\xff\xfe2\x00.\x000\x00
Thresholding method:\xff\xfeO\x00t\x00s\x00u\x00
IdentifySecondaryObjects:[module_num:9|svn_version:\'Unknown\'|variable_revision_number:10|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the input objects:\xff\xfeN\x00u\x00c\x00l\x00e\x00i\x00
Name the objects to be identified:\xff\xfeC\x00e\x00l\x00l\x00s\x00
Select the method to identify the secondary objects:\xff\xfeP\x00r\x00o\x00p\x00a\x00g\x00a\x00t\x00i\x00o\x00n\x00
Select the input image:\xff\xfeC\x00o\x00r\x00r\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Number of pixels by which to expand the primary objects:\xff\xfe1\x000\x00
Regularization factor:\xff\xfe0\x00.\x000\x005\x00
Discard secondary objects touching the border of the image?:\xff\xfeN\x00o\x00
Discard the associated primary objects?:\xff\xfeN\x00o\x00
Name the new primary objects:\xff\xfeF\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00N\x00u\x00c\x00l\x00e\x00i\x00
Fill holes in identified objects?:\xff\xfeY\x00e\x00s\x00
Threshold setting version:\xff\xfe1\x000\x00
Threshold strategy:\xff\xfeG\x00l\x00o\x00b\x00a\x00l\x00
Thresholding method:\xff\xfeO\x00t\x00s\x00u\x00
Threshold smoothing scale:\xff\xfe1\x00.\x003\x008\x004\x004\x00
Threshold correction factor:\xff\xfe1\x00.\x000\x00
Lower and upper bounds on threshold:\xff\xfe0\x00.\x000\x00,\x001\x00.\x000\x00
Manual threshold:\xff\xfe0\x00.\x000\x00
Select the measurement to threshold with:\xff\xfeN\x00o\x00n\x00e\x00
Two-class or three-class thresholding?:\xff\xfeT\x00h\x00r\x00e\x00e\x00 \x00c\x00l\x00a\x00s\x00s\x00e\x00s\x00
Assign pixels in the middle intensity class to the foreground or the background?:\xff\xfeF\x00o\x00r\x00e\x00g\x00r\x00o\x00u\x00n\x00d\x00
Size of adaptive window:\xff\xfe5\x000\x00
Lower outlier fraction:\xff\xfe0\x00.\x000\x005\x00
Upper outlier fraction:\xff\xfe0\x00.\x000\x005\x00
Averaging method:\xff\xfeM\x00e\x00a\x00n\x00
Variance method:\xff\xfeS\x00t\x00a\x00n\x00d\x00a\x00r\x00d\x00 \x00d\x00e\x00v\x00i\x00a\x00t\x00i\x00o\x00n\x00
# of deviations:\xff\xfe2\x00.\x000\x00
Thresholding method:\xff\xfeO\x00t\x00s\x00u\x00
IdentifySecondaryObjects:[module_num:10|svn_version:\'Unknown\'|variable_revision_number:10|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the input objects:\xff\xfeN\x00u\x00c\x00l\x00e\x00i\x00
Name the objects to be identified:\xff\xfeC\x00e\x00l\x00l\x00s\x00N\x00o\x00E\x00d\x00g\x00e\x00
Select the method to identify the secondary objects:\xff\xfeP\x00r\x00o\x00p\x00a\x00g\x00a\x00t\x00i\x00o\x00n\x00
Select the input image:\xff\xfeC\x00o\x00r\x00r\x00P\x00h\x00_\x00g\x00o\x00l\x00g\x00i\x00
Number of pixels by which to expand the primary objects:\xff\xfe1\x000\x00
Regularization factor:\xff\xfe0\x00.\x000\x005\x00
Discard secondary objects touching the border of the image?:\xff\xfeY\x00e\x00s\x00
Discard the associated primary objects?:\xff\xfeN\x00o\x00
Name the new primary objects:\xff\xfeF\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00N\x00u\x00c\x00l\x00e\x00i\x00
Fill holes in identified objects?:\xff\xfeY\x00e\x00s\x00
Threshold setting version:\xff\xfe1\x000\x00
Threshold strategy:\xff\xfeG\x00l\x00o\x00b\x00a\x00l\x00
Thresholding method:\xff\xfeO\x00t\x00s\x00u\x00
Threshold smoothing scale:\xff\xfe1\x00.\x003\x008\x004\x004\x00
Threshold correction factor:\xff\xfe1\x00.\x000\x00
Lower and upper bounds on threshold:\xff\xfe0\x00.\x000\x00,\x001\x00.\x000\x00
Manual threshold:\xff\xfe0\x00.\x000\x00
Select the measurement to threshold with:\xff\xfeN\x00o\x00n\x00e\x00
Two-class or three-class thresholding?:\xff\xfeT\x00h\x00r\x00e\x00e\x00 \x00c\x00l\x00a\x00s\x00s\x00e\x00s\x00
Assign pixels in the middle intensity class to the foreground or the background?:\xff\xfeF\x00o\x00r\x00e\x00g\x00r\x00o\x00u\x00n\x00d\x00
Size of adaptive window:\xff\xfe5\x000\x00
Lower outlier fraction:\xff\xfe0\x00.\x000\x005\x00
Upper outlier fraction:\xff\xfe0\x00.\x000\x005\x00
Averaging method:\xff\xfeM\x00e\x00a\x00n\x00
Variance method:\xff\xfeS\x00t\x00a\x00n\x00d\x00a\x00r\x00d\x00 \x00d\x00e\x00v\x00i\x00a\x00t\x00i\x00o\x00n\x00
# of deviations:\xff\xfe2\x00.\x000\x00
Thresholding method:\xff\xfeO\x00t\x00s\x00u\x00
IdentifyTertiaryObjects:[module_num:11|svn_version:\'Unknown\'|variable_revision_number:3|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the larger identified objects:\xff\xfeC\x00e\x00l\x00l\x00s\x00
Select the smaller identified objects:\xff\xfeN\x00u\x00c\x00l\x00e\x00i\x00
Name the tertiary objects to be identified:\xff\xfeC\x00y\x00t\x00o\x00p\x00l\x00a\x00s\x00m\x00
Shrink smaller object prior to subtraction?:\xff\xfeY\x00e\x00s\x00
ExportToSpreadsheet:[module_num:12|svn_version:\'Unknown\'|variable_revision_number:12|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the column delimiter:\xff\xfeC\x00o\x00m\x00m\x00a\x00 \x00(\x00"\x00,\x00"\x00)\x00
Add image metadata columns to your object data file?:\xff\xfeY\x00e\x00s\x00
Select the measurements to export:\xff\xfeN\x00o\x00
Calculate the per-image mean values for object measurements?:\xff\xfeN\x00o\x00
Calculate the per-image median values for object measurements?:\xff\xfeN\x00o\x00
Calculate the per-image standard deviation values for object measurements?:\xff\xfeN\x00o\x00
Output file location:\xff\xfeD\x00e\x00f\x00a\x00u\x00l\x00t\x00 \x00I\x00n\x00p\x00u\x00t\x00 \x00F\x00o\x00l\x00d\x00e\x00r\x00\x7C\x00
Create a GenePattern GCT file?:\xff\xfeN\x00o\x00
Select source of sample row name:\xff\xfeM\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Select the image to use as the identifier:\xff\xfeN\x00o\x00n\x00e\x00
Select the metadata to use as the identifier:\xff\xfeN\x00o\x00n\x00e\x00
Export all measurement types?:\xff\xfeY\x00e\x00s\x00
Press button to select measurements:\xff\xfe
Representation of Nan/Inf:\xff\xfeN\x00a\x00N\x00
Add a prefix to file names?:\xff\xfeY\x00e\x00s\x00
Filename prefix:\xff\xfet\x00e\x00s\x00t\x00_\x00i\x00m\x00a\x00g\x00e\x00Q\x00C\x00
Overwrite existing files without warning?:\xff\xfeN\x00o\x00
Data to export:\xff\xfeD\x00o\x00 \x00n\x00o\x00t\x00 \x00u\x00s\x00e\x00
Combine these object measurements with those of the previous object?:\xff\xfeN\x00o\x00
File name:\xff\xfeD\x00A\x00T\x00A\x00.\x00c\x00s\x00v\x00
Use the object name for the file name?:\xff\xfeY\x00e\x00s\x00