From 4d84a041660bc884ade0a630872b99b1303029f4 Mon Sep 17 00:00:00 2001
From: cgpu <38183826+cgpu@users.noreply.github.com>
Date: Wed, 3 Nov 2021 20:09:56 +0000
Subject: [PATCH] Update main.nf

---
 main.nf | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/main.nf b/main.nf
index 1aab7cf..cc970fc 100644
--- a/main.nf
+++ b/main.nf
@@ -55,6 +55,7 @@ numberFilesForProcessA = params.filesProcessA
 processAWriteToDiskMb = params.processAWriteToDiskMb
 processAInput = Channel.from([1] * numberRepetitionsForProcessA)
 processAInputFiles = Channel.fromPath("${params.dataLocation}/**${params.fileSuffix}").take( numberRepetitionsForProcessA )
+multiDockerConfig = Channel.fromPath(params.multidocker_config)
 
 process processA {
 	publishDir "${params.output}/${task.hash}/", mode: 'copy'
@@ -63,6 +64,7 @@ process processA {
 	input:
 	val x from processAInput
 	file(a_file) from processAInputFiles
+	file(multiDockerConfig) from multiDockerConfig
 
 	output:
 	val x into processAOutput
@@ -70,6 +72,7 @@ process processA {
 	val x into processDInput
 	file "*.txt"
 	file("command-logs") optional true
+	file("multidocker.config")
 
 	script:
 	"""
@@ -85,6 +88,7 @@ process processA {
 	echo "task cpus: ${task.cpus}"
 
 	${params.savescript}
+	cp $multiDockerConfig multidocker.config
 	"""
 }