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In lib/lcdbwf/R/functional-enrichment.R, enrich_test() at line 127 has "OR" (Over Representation Analysis) hardcoded as a default parameter and in fact never uses the value assigned in the config.yaml file. We want to be able to use "GSEA"(Gene Set Enrichment Analysis) as well by assigning it in config.yaml, but it seems setting kind=GSEA currently throws an error. We need to configure this to work with both kind=OR as well as kind=GSEA.
The text was updated successfully, but these errors were encountered:
In
lib/lcdbwf/R/functional-enrichment.R
, enrich_test() at line 127 has "OR" (Over Representation Analysis) hardcoded as a default parameter and in fact never uses the value assigned in theconfig.yaml
file. We want to be able to use "GSEA"(Gene Set Enrichment Analysis) as well by assigning it inconfig.yaml
, but it seems settingkind=GSEA
currently throws an error. We need to configure this to work with bothkind=OR
as well askind=GSEA
.The text was updated successfully, but these errors were encountered: