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Which Columns Used From msms.txt for CE Calibration #98

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kostrouc opened this issue Feb 8, 2023 · 0 comments
Open

Which Columns Used From msms.txt for CE Calibration #98

kostrouc opened this issue Feb 8, 2023 · 0 comments

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@kostrouc
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kostrouc commented Feb 8, 2023

I have some predicted peptide sequences output from a non-standard software. I would like to know specifically which columns at a minimum Prosit uses for the CE calibration step so that I can process them with this software to eventually generate a .dlib database for searching with EncylopeDIA.

Attached is an example of my predicted sequence output file structure which contains the modified sequence, spectra number, score, charge, calculated m/z, and expected m/z. What additional calculations will I need to perform to match the minimum required columns for the CE calibration step to be successful?
example_pept_ids.xlsx

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