diff --git a/.dockerignore b/.dockerignore index ac7c222..6f4e937 100644 --- a/.dockerignore +++ b/.dockerignore @@ -2,5 +2,8 @@ admin build data dist +docs results .* +matplotlib_mock +tests \ No newline at end of file diff --git a/CHANGELOG b/CHANGELOG index fd4904a..7117bba 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,3 +1,15 @@ +v0.7.0 +- Less strict llvmlite dependency +- Add functionality to requantify fragpipe combined_protein.tsv +- Fix random number seed for mokapot +- Major refactoring and linting of multiple scripts +- Add system tests +- Fix peptide_protein_map input option for quantification.py +- Refactor picked_group_fdr.py, add some unit tests +- Add --suppress_missing_peptide_warning to all relevant modules +- Add readthedocs documentation +- Allow combining multiple Sage or FragPipe searches + v0.6.6 - Revert return type to List for ProteinGroups.get_protein_groups diff --git a/docs/release_checklist.md b/docs/release_checklist.md index f6c45eb..f76994b 100644 --- a/docs/release_checklist.md +++ b/docs/release_checklist.md @@ -1,4 +1,4 @@ -1. test if unit and system tests pass: `make test; make integration_test; make pipeline_test` +1. test if unit and system tests pass: `make test; make integration_test; make pipeline_test; make system_test` test if fragpipe and sage system tests pass: `make fragpipe_test; make sage_test` 2. check if docker image works: `make build; make all` 3. update version number: `poetry version ` diff --git a/pyproject.toml b/pyproject.toml index 712127e..056b12a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "picked_group_fdr" -version = "0.6.6" +version = "0.7.0" description = "Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments" authors = ["Matthew The "] license= "Apache-2.0"