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poetry.lock
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# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
[[package]]
name = "alphatims"
version = "1.0.8"
description = "A Python package to index Bruker TimsTOF raw data for fast and easy accession and visualization"
optional = false
python-versions = ">=3.8,<4"
files = [
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click = "*"
h5py = "*"
numba = "*"
pandas = "*"
psutil = "*"
pyzstd = "*"
tqdm = "*"
[package.extras]
development = ["autodocsumm", "bumpversion", "jupyter", "jupyter-contrib-nbextensions", "plotly", "pyinstaller", "pywin32", "seaborn", "sphinx-rtd-theme", "twine"]
development-stable = ["autodocsumm (==0.2.7)", "bumpversion (==0.6.0)", "jupyter (==1.0.0)", "jupyter-contrib-nbextensions (==0.5.1)", "plotly (==4.12.0)", "pyinstaller (==5.6.2)", "pywin32", "seaborn (==0.11.0)", "sphinx-rtd-theme (==0.5.2)", "twine (==4.0.0)"]
legacy = ["python-lzf"]
legacy-stable = ["python-lzf (==0.2.4)"]
plotting = ["bokeh", "datashader", "hvplot", "jinja2", "selenium"]
plotting-stable = ["bokeh (==2.2.3)", "datashader (==0.12.1)", "hvplot (==0.7.1)", "jinja2 (==3.0.2)", "selenium (==3.141.0)"]
stable = ["click (==8.1.3)", "h5py (==3.8.0)", "numba (==0.56.4)", "pandas (==1.5.3)", "psutil (==5.9.4)", "pyzstd (==0.15.3)", "tqdm (==4.64.1)"]
[[package]]
name = "anndata"
version = "0.10.9"
description = "Annotated data."
optional = false
python-versions = ">=3.9"
files = [
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array-api-compat = ">1.4,<1.5 || >1.5"
exceptiongroup = {version = "*", markers = "python_version < \"3.11\""}
h5py = ">=3.1"
natsort = "*"
numpy = ">=1.23"
packaging = ">=20.0"
pandas = ">=1.4,<2.1.0rc0 || >2.1.0rc0,<2.1.2 || >2.1.2"
scipy = ">1.8"
[package.extras]
cu11 = ["cupy-cuda11x"]
cu12 = ["cupy-cuda12x"]
dev = ["pytest-xdist", "setuptools-scm", "towncrier (>=24.8.0)"]
doc = ["awkward (>=2.0.7)", "ipython", "myst-parser", "nbsphinx", "readthedocs-sphinx-search", "scanpydoc[theme,typehints] (>=0.13.6)", "sphinx (>=4.4)", "sphinx-autodoc-typehints (>=2.2.0)", "sphinx-book-theme (>=1.1.0)", "sphinx-copybutton", "sphinx-design (>=0.5.0)", "sphinx-issues", "sphinx-toolbox", "sphinxext-opengraph", "zarr"]
gpu = ["cupy"]
test = ["awkward (>=2.3)", "boltons", "dask[array,distributed] (>=2022.09.2,<2024.8.0)", "httpx", "joblib", "loompy (>=3.0.5)", "matplotlib", "openpyxl", "pyarrow", "pytest (>=8.2)", "pytest-cov (>=2.10)", "pytest-memray", "pytest-mock", "scanpy", "scikit-learn", "zarr (<3.0.0a0)"]
[[package]]
name = "array-api-compat"
version = "1.7.1"
description = "A wrapper around NumPy and other array libraries to make them compatible with the Array API standard"
optional = false
python-versions = "*"
files = [
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dask = ["dask"]
jax = ["jax"]
numpy = ["numpy"]
pytorch = ["pytorch"]
sparse = ["sparse (>=0.15.1)"]
[[package]]
name = "bottleneck"
version = "1.4.2"
description = "Fast NumPy array functions written in C"
optional = false
python-versions = ">=3.9"
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