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Makefile_header.mk
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#------------------------------------------------------------------------------
# GEOS-Chem Global Chemical Transport Model #
#------------------------------------------------------------------------------
#BOP
#
# !IROUTINE: Makefile_header.mk
#
# !DESCRIPTION: This sub-makefile defines the variables which specify
# compilation options for the different supported compiler/platform
# combinations. Also, the default makefile compilation rules are specified
# here.
#\\
#\\
# !REMARKS:
# To build the programs, call "make" with the following syntax:
# .
# make -jN TARGET REQUIRED-FLAGS [ OPTIONAL-FLAGS ]
#
# To display a complete list of options, type "make help".
# .
# The following variables are exported to the main-level Makefile:
# .
# Variable Description
# -------- -----------
# CC Contains the default C compilation commands (for PGI only)
# F90 Contains the Fortran compilation commands
# FREEFORM Contains the command to force F90 "free format" compilation
# LD Contains the command to link to libraries & make executable
# LINK Contains the commands to link to GEOS-Chem built libraries
# R8 Contains the command to force REAL -> REAL*8
# SHELL Contains the default Unix shell to use when building code
# NCL Contains the default netCDF library link commands
# .
# FFLAGS is a local variable that is not returned to the "outside world",
# but is only used locally. COMPILER, HDF5, and OMP are all input via the
# command line or via environment variables.
# .
# NOTE: We now use SHELL :=/bin/bash as the default Unix shell. This allows
# us to extend the Makefile ifeq statements so that we can test for more than
# one string. The following example is used to ensure that the met field name
# selected by the user is case-insensitive:
#
# # %%%%% GEOS-5 %%%%%
# REGEXP :=((^[Gg][Ee][Oo][Ss])?5|.5)
# ifeq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
# USER_DEFS += -DGEOS_5
# endif
# .
# The [[ ]] in bash is an evaluation. The above ifeq statement uses regular
# expressions to test if the MET variable matches the string "GEOS" (case-
# insensitive) and either "5" or "any character and then a 5". This will
# return true (via the "echo true" statement) for combinations like "GEOS-5",
# "geos5", "Geos-5", "GeOs.5", etc. This is a robust way of evaluating
# the user's input, and will make errors less likely.
#
# !REVISION HISTORY:
# 16 Sep 2009 - R. Yantosca - Initial version
# 22 Sep 2009 - R. Yantosca - Bug fix, added -I$(HDR) to F90 compilation lines
# 24 Sep 2009 - R. Yantosca - added NONUMA option for PGI compiler
# 07 Oct 2009 - R. Yantosca - Replaced .SUFFIXES section w/ pattern rules
# 19 Nov 2009 - R. Yantosca - Now use OMP variable to determine whether to
# turn on OpenMP parallelization options
# 23 Nov 2009 - R. Yantosca - Now use -module $(MOD) instead of -I$(MOD) to
# specify the directory for *.mod files on both
# IFORT and PGI compilers.
# 23 Nov 2009 - R. Yantosca - Now use -moddir=$(MOD) and -M$(MOD) instead of
# -I$(MOD) to specify the directory for *.mod
# files on the SunStudio compiler.
# 23 Nov 2009 - R. Yantosca - Change DEBUG to allow for new version of
# Totalview which doesn't choke when debugging
# parallel code (Totalview 8.6.1-1)
# 02 Dec 2009 - R. Yantosca - Added SUN32 switch for building 32-bit
# executbable on the SunStudio compiler
# 11 Dec 2009 - R. Yantosca - Now define SHELL here and export to other
# Makefiles, so as to have a single place where
# the Unix shell name is defined.
# 21 Dec 2009 - R. Yantosca - Add H5I and H5L variables to specify the
# HDF5 library and include paths. Also set
# the default to not link to the HDF5 libraries.
# 21 Dec 2009 - R. Yantosca - Now pass LINK back to the outside world, so
# that the Makefile that builds the executable
# can reference it.
# 19 Jan 2010 - R. Yantosca - Minor fix, add -m64 if SUN32 is not defined.
# 25 Jan 2010 - R. Yantosca - Now add -DTOMAS to FFLAGS if necessary
# 28 Jan 2010 - C. Carouge - Add -lIsoropia to LINK, for ISORROPIA II
# 16 Feb 2011 - R. Yantosca - Now add -DAPM to FFLAGS if necessary
# 25 Aug 2011 - R. Yantosca - Add "-fp-model source" to FFLAGS for IFORT
# compiler. This will prevent aggressive
# optimizations from changing numerical results.
# 25 Aug 2011 - R. Yantosca - Add -CU (check for uninit'd variables) to
# FFLAGS when using IFORT w/ the DEBUG option.
# 26 Aug 2011 - R. Yantosca - Allow for deactivation of the "-fp-model source"
# option by using the PRECISE=no env variable
# 24 Jan 2012 - R. Yantosca - If NETCDF=yes, GEOS-Chem will link and include
# to the netCDF dir paths that are specified
# 24 Jan 2012 - R. Yantosca - Now use := for makefile assignment statements
# 10 Feb 2012 - R. Yantosca - When compiling with NETCDF=yes or HDF5=yes,
# we must also add the flags -mcmodel=medium
# -i-dynamic to FFLAGS in order to avoid memory
# errors (for IFORT only)
# 10 Feb 2012 - R. Yantosca - Remove -CU from the DEBUG option (IFORT only)
# 19 Mar 2012 - R. Yantosca - Add optional NO_ISO switch, which will turn off
# the ISORROPIA ATE package for testing
# 05 Apr 2012 - R. Yantosca - Now assume netCDF is always used
# 05 Apr 2012 - R. Yantosca - Change BL_INC_NETCDF to INC_NETCDF
# 05 Apr 2012 - R. Yantosca - Change BL_INC_HDF5 to INC_HDF5
# 05 Apr 2012 - R. Yantosca - Change BL_LIB_NETCDF to LIB_NETCDF
# 05 Apr 2012 - R. Yantosca - Change BL_LIB_HDF5 to LIB_HDF5
# 30 Apr 2012 - R. Yantosca - Add NETCDF3=[yes|no] makefile option
# 30 Apr 2012 - R. Yantosca - Use separate netCDF link and include paths
# for netCDF3 and for netCDF4
# 30 Apr 2012 - R. Yantosca - Also add -mcmodel=medium flag for PGI compiler
# 09 May 2012 - R. Yantosca - Now try to get the proper linking sequence
# for netCDF etc w/ nf-config and nc-config.
# 11 May 2012 - R. Yantosca - Now export NCL (netCDF linking sequence)
# 17 Aug 2012 - R. Yantosca - Now add RRTMG=yes option for RRTMG rad transfer
# 07 Sep 2012 - R. Yantosca - Now add OPT variable to set global opt levels
# 07 Sep 2012 - R. Yantosca - Also set TRACEBACK for PGI compiler
# 17 Apr 2013 - R. Yantosca - Add switch to set -DKPP_SOLVE_ALWAYS, which
# will force KPP to get past nonconvergences
# 25 Feb 2013 - S. Farina - Add flag for TOMAS40
# 22 Apr 2013 - R. Yantosca - TOMAS40=yes option now sets -DTOMAS -DTOMAS40
# 28 Apr 2013 - S. Farina - Add flags for TOMAS15 and TOMAS12
# 13 Aug 2013 - R. Yantosca - Removed "define.h"; now set all GEOS-Chem
# user options via the Make command
# 14 Aug 2013 - R. Yantosca - Now use regular expressions to test the
# validity of command-line inputs
# 21 Aug 2013 - R. Yantosca - Improved error checking for command line inputs
# 26 Aug 2013 - R. Yantosca - Add -debug all as an IFORT debugging option
# 16 Sep 2013 - R. Yantosca - Now set GIGC Cpp switches first. This allows
# us to skip the GRID setting if we are using
# EXTERNAL_GRID=yes or EXTERNAL_FORCING=yes.
# 18 Sep 2013 - M. Long - Add edits for HPC Grid-Indpendent GEOS-Chem
# 26 Sep 2013 - R. Yantosca - MET=geosfp now sets Cpp switch w/ -DGEOS_FP
# 07 Nov 2013 - R. Yantosca - NEST=se to now sets CPP switch w/ -DNESTED_SE
# 08 Nov 2013 - R. Yantosca - Add FPEX flag to avoid conflicting with the
# ESMF/MAPL environment variable FPE
# 24 Feb 2014 - R. Yantosca - Add UCX=yes flag for invoking UCX strat chem
# 18 Mar 2014 - R. Yantosca - Now add TAU_PROF=y flag to invoke TAU profiler
# 19 Mar 2014 - R. Yantosca - Move library link commands after the sections
# that set the C-preprocessor switches
# 19 Mar 2014 - R. Yantosca - Restore GTMM compilation funcitonality
# 19 Mar 2014 - R. Yantosca - Add more visible comment section dividers
# 20 Mar 2014 - R. Yantosca - Bug fix: "+= -DDEBUG" instead of ":= -DDEBUG"
# 09 Jul 2014 - R. Yantosca - Now don't require MET or GRID if target is
# srcdoc, utildoc, gtmmdoc, makedoc, or hemcodoc
# 21 Jul 2014 - R. Yantosca - Update build sequence
# 03 Oct 2014 - R. Yantosca - Now turn on NO_REDUCED=y for hpc target
# 03 Oct 2014 - R. Yantosca - Now compatible with netCDF 4.1.1 or 4.2+
# 17 Oct 2014 - R. Yantosca - Don't require MET or GRID to remove ESMF etc.
# 05 Nov 2014 - R. Yantosca - Will compile w/ 8-byte precision by default
# 14 Nov 2014 - R. Yantosca - Further updates for hpc compilation
# 21 Nov 2014 - R. Yantosca - Add special compilation command for ISORROPIA
# 21 Nov 2014 - R. Yantosca - Add cosmetic changes and indentation
# 06 Jan 2015 - R. Yantosca - Add two-way nesting options from Y. Y. Yan
# 09 Jan 2015 - M. Sulprizio- Now properly link to the RRTMG directory
# 13 Jan 2015 - R. Yantosca - Add fix for GEOS-Chem-Libraries library path
# 08 Apr 2015 - R. Yantosca - Bug fix: set RRTMG=yes if it passes the regexp
# 10 Apr 2015 - R. Yantosca - Export RRTMG_NEEDED var to be used elsewhere
# 10 Apr 2015 - R. Yantosca - Bug fix: -l rad should be -lrad in link var
# 12 May 2015 - R. Yantosca - Bug fix for PGI compiler: remove extra "-"
# in front of $(NC_INC_CMD) in the PGI section
# 12 May 2015 - R. Yantosca - Now use GC_BIN, GC_INCLUDE to point to the
# netCDF library paths and GC_F_BIN, GC_F_INCLUDE
# to point to netCDF-Fortran library paths.
# (In some cases, these are the same).
# 20 May 2015 - R. Yantosca - Test if GC_F_BIN and GC_F_INCLUDE are defined
# as env variables before trying to use them.
# 29 May 2015 - R. Yantosca - Now set KPP_CHEM for KPP. We can't redefine
# the CHEM variable because it is an env var.
# 04 Jun 2015 - R. Yantosca - Now use RRTMG_NO_CLEAN=y or RRTMG_NOCLEAN=y to
# removing RRTMG objects, modules, and libraries.
# 04 Jun 2015 - R. Yantosca - Bug fix: don't turn on UCX except for CHEM=UCX
# 15 Jun 2015 - R. Yantosca - Now define the HEMCO standalone link command
# separately from the GEOS-Chem link command
#EOP
#------------------------------------------------------------------------------
#BOC
###############################################################################
### ###
### Set the default Unix shell and some error message variables ###
### ###
###############################################################################
# Set default shell to bash, for use with the Makefile conditionals
SHELL :=/bin/bash
# Error message for bad COMPILER input
ERR_CMPLR :="Select a compiler: COMPILER=ifort, COMPILER=pgi"
# Error message for bad MET input
ERR_MET :="Select a met field: MET=gcap, MET=geos4, MET=geos5, MET=merra, MET=geos-fp)"
# Error message for bad GRID input
ERR_GRID :="Select a horizontal grid: GRID=4x5. GRID=2x25, GRID=05x0666, GRID=025x03125"
# Error message for bad NEST input
ERR_NEST :="Select a nested grid: NEST=ch, NEST=eu, NEST=na NEST=se"
# Error message for bad two-way coupled model input (yanyy,6/18/14)
ERR_COUPLECH :="Select a coupled grid for Asia : COUPLECH=2x25ch, COUPLECH=4x5ch"
ERR_COUPLENA :="Select a coupled grid for North America: COUPLENA=2x25na, COUPLENA=4x5na"
ERR_COUPLEEU :="Select a coupled grid for Europe : COUPLEEU=2x25eu, COUPLEEU=4x5eu"
ERR_COUPLESE :="Select a coupled grid for SE Asia : COUPLESE=2x25se, COUPLEEU=4x5se"
ERR_COUPLE :="Select a coupled choice: COUPLE=yes"
# Error message for bad GIGC config
ERR_GIGC :="Unable to find the GIGC configuration file. Have you downloaded the GIGC?"
# Error message for bad GIGC config
ERR_GIGC :="Unable to find the GIGC configuration file. Have you downloaded the GIGC?"
###############################################################################
### ###
### Set C-preprocessor switches representing user options. These are not ###
### specific to any compiler, but are general options for the simulation. ###
### ###
### NOTE: To make the user input more robust, we use regular expression ###
### syntax to match characters in the various Makefile variables. See ###
### this web page for more info: ###
### http://www.tldp.org/LDP/abs/html/x17046.html ###
### ###
###############################################################################
#------------------------------------------------------------------------------
# Compiler settings
#------------------------------------------------------------------------------
# %%%%% OpenMP parallelization default) %%%%%
ifndef OMP
OMP :=yes
endif
# %%%%% Set the HPC variable if we are building for use w/ ESMF/MPI %%%%
ifeq ($(shell [[ "$(MAKECMDGOALS)" =~ "hpc" ]] && echo true),true)
HPC :=yes
export HPC
endif
# %%%%% For HPC, we disable OpenMP and turn on the full vertical grid %%%
ifeq ($(HPC),yes)
OMP :=no
NO_REDUCED :=yes
# PRECISION :=4
endif
# %%%%% Default to 8-byte precision unless specified otherwise %%%%%
ifndef PRECISION
PRECISION :=8
endif
# %%%%% Set default compiler %%%%%
ifndef COMPILER
COMPILER :=ifort
endif
# %%%%% Test if IFORT compiler is selected %%%%%
REGEXP :=(^[Ii][Ff][Oo][Rr][Tt])
ifeq ($(shell [[ "$(COMPILER)" =~ $(REGEXP) ]] && echo true),true)
COMPLER :=ifort
COMPILE_CMD :=ifort
USER_DEFS += -DLINUX_IFORT
endif
# %%%%% Test if PGI compiler is selected %%%%%
REGEXP :=(^[Pp][Gg][Ii])
ifeq ($(shell [[ "$(COMPILER)" =~ $(REGEXP) ]] && echo true),true)
COMPILER :=pgi
COMPILE_CMD :=pgf90
USER_DEFS += -DLINUX_PGI
endif
# %%%%% ERROR CHECK! Make sure our COMPILER selection is valid! %%%%%
REGEXP :=((-DLINUX_)?IFORT|PGI)
ifneq ($(shell [[ "$(USER_DEFS)" =~ $(REGEXP) ]] && echo true),true)
$(error $(ERR_CMPLR))
endif
#------------------------------------------------------------------------------
# Grid-Independent GEOS-Chem (aka "Mega-Chem") settings
#------------------------------------------------------------------------------
# %%%%% DEVEL %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(DEVEL)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DDEVEL
endif
# %%%%% ESMF %%%%%
REGEXP := (^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(ESMF)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DESMF_
NO_GRID_NEEDED :=1
endif
# %%%%% EXTERNAL_GRID %%%%%
REGEXP := (^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(EXTERNAL_GRID)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXTERNAL_GRID
NO_GRID_NEEDED :=1
endif
# %%%%% EXTERNAL_FORCING %%%%%
REGEXP := (^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(EXTERNAL_FORCING)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXTERNAL_FORCING
NO_GRID_NEEDED :=1
endif
# %%%%% NO_BPCH (for disabling old diagnostic arrays) %%%%%
REGEXP := (^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(NO_BPCH)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNO_BPCH
endif
#------------------------------------------------------------------------------
# KPP settings chemistry solver settings. NOTE: We can't redefine CHEM
# (since it is an environent variable), so define a shadow variable KPP_CHEM.
# %%%%% NOTE: These will probably be obsolete when FLEXCHEM is added. %%%%%
#------------------------------------------------------------------------------
# Test if the CHEM value is set
IS_CHEM_SET :=0
# %%%%% Test if CHEM=UCX (will also turn on UCX) %%%%%
REGEXP :=(^[Uu][Cc][Xx])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
UCX :=y
KPP_CHEM :=UCX
IS_CHEM_SET :=1
endif
# %%%%% Test if CHEM=SOA %%%%%
REGEXP :=(^[Ss][Oo][Aa])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=SOA
IS_CHEM_SET :=1
endif
# %%%%% Test if CHEM=NOx_Ox_HC_Aer_Br %%%%%
REGEXP :=(^[Nn][Oo][Xx]_[Oo][Xx]_[Hh][Cc]_[Aa][Ee][Rr]_[Bb][Rr])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=NOx_Ox_HC_Aer_Br
IS_CHEM_SET :=1
endif
# %%%%% Test if CHEM=tropchem (synonym for NOx_Ox_HC_Aer_Br) %%%%%
REGEXP :=(^[Tt][Rr][Oo][Pp][Cc][Hh][Ee][Mm])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=NOx_Ox_HC_Aer_Br
IS_CHEM_SET :=1
endif
# %%%%% Default setting: CHEM=benchmark %%%%%
ifeq ($(IS_CHEM_SET),0)
KPP_CHEM :=benchmark
IS_CHEM_SET :=1
endif
#------------------------------------------------------------------------------
# UCX stratospheric-tropospheric chemistry settings
#------------------------------------------------------------------------------
# %%%%% UCX %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(UCX)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DUCX
NO_REDUCED :=yes
endif
#------------------------------------------------------------------------------
# RRTMG radiative transfer model settings
#------------------------------------------------------------------------------
# %%%%% RRTMG %%%%%
RRTMG_NEEDED :=0
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(RRTMG)" =~ $(REGEXP) ]] && echo true),true)
RRTMG_NEEDED :=1
USER_DEFS += -DRRTMG
endif
# %%%%% Give users the option to make realclean except for RRTMG %%%%%
# %%%%% if they set variables RRTMG_NOCLEAN=y or RRTMG_NO_CLEAN=y %%%%%
# %%%%% This should help reduce the amount of time to recompile. %%%%%
RRTMG_CLEAN :=1
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(RRTMG_NO_CLEAN)" =~ $(REGEXP) ]] && echo true),true)
RRTMG_CLEAN :=0
endif
ifeq ($(shell [[ "$(RRTMG_NOCLEAN)" =~ $(REGEXP) ]] && echo true),true)
RRTMG_CLEAN :=0
endif
#------------------------------------------------------------------------------
# Met field settings
#------------------------------------------------------------------------------
# If the user has omitted MET, then throw an error UNLESS we are trying
# to compile with "clean", "distclean", "realclean", "doc", "help",
# "ncdfcheck", or "libnc". These targets don't depend on the value of MET.
ifndef MET
REGEXP :=($clean|^doc|^help|^libnc|^ncdfcheck|gigc_debug|the_nuclear_option|wipeout.|baselib.)
ifeq ($(shell [[ "$(MAKECMDGOALS)" =~ $(REGEXP) ]] && echo true),true)
NO_MET_NEEDED :=1
else
$(error $(ERR_MET))
endif
endif
# We can skip the following checks for targets that don't require MET
ifndef NO_MET_NEEDED
# %%%%% GCAP %%%%%
REGEXP :=(^[Gg][Cc][Aa][Pp])
ifeq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DGCAP
endif
# %%%%% GEOS-4 %%%%%
REGEXP :=((^[Gg][Ee][Oo][Ss])?4|.4)
ifeq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DGEOS_4
endif
# %%%%% GEOS-5 %%%%%
REGEXP :=((^[Gg][Ee][Oo][Ss])?5|.5)
ifeq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DGEOS_5
endif
# %%%%% MERRA %%%%%
REGEXP :=(^[Mm][Ee][Rr][Rr][Aa])
ifeq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DMERRA
endif
# %%%%% GEOS-FP %%%%%
REGEXP :=(^[Gg][Ee][Oo][Ss][Ff][Pp])|(^[Gg][Ee][Oo][Ss].[Ff][Pp])
ifeq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DGEOS_FP
endif
# %%%%% REDUCED VERTICAL GRID (default, unless specified otherwise) %%%%
ifndef NO_REDUCED
USER_DEFS += -DGRIDREDUCED
else
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(NO_REDUCED)" =~ $(REGEXP) ]] && echo true),true)
endif
endif
# %%%%% ERROR CHECK! Make sure our MET selection is valid! %%%%%
REGEXP :=(\-DGCAP|\-DGEOS_4|\-DGEOS_5|\-DMERRA|\-DGEOS_FP)
ifneq ($(shell [[ "$(USER_DEFS)" =~ $(REGEXP) ]] && echo true),true)
$(error $(ERR_MET))
endif
endif # NO_MET_NEEDED
#------------------------------------------------------------------------------
# Horizontal grid settings
#------------------------------------------------------------------------------
# We can skip the following checks for targets that don't require GRID
# If the user has omitted GRID, then throw an error UNLESS we are trying
# to compile with "clean", "distclean", "realclean", "doc", "help",
# "ncdfcheck", or "libnc". These targets don't depend on the value of GRID.
ifndef NO_GRID_NEEDED
ifndef GRID
REGEXP :=($clean|^doc|^help|^libnc|^ncdfcheck|gigc_debug|the_nuclear_option|wipeout.|baselib.|^wipeout)
ifeq ($(shell [[ $(MAKECMDGOALS) =~ $(REGEXP) ]] && echo true),true)
NO_GRID_NEEDED :=1
else
$(error $(ERR_GRID))
endif
endif
endif
# We can skip the following checks for targets that don't require GRID
ifndef NO_GRID_NEEDED
# %%%%% 4 x 5 %%%%%
REGEXP :=(^4.5|^4\.0.5\.0)
ifeq ($(shell [[ "$(GRID)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DGRID4x5
endif
# %%%%% 2 x 2.5 %%%%%
REGEXP :=(^2.25|^2.2\.5|^2\.0.2\.5)
ifeq ($(shell [[ "$(GRID)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DGRID2x25
endif
# %%%%% 1 x 1.25 %%%%%
REGEXP :=(^1.125|^1.1\.25|^1\.0.1\.25)
ifeq ($(shell [[ "$(GRID)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DGRID1x125
endif
# %%%%% 0.5 x 0.666 %%%%%
REGEXP :=(^05.066.|^0\.5.0\.066.)
ifeq ($(shell [[ "$(GRID)" =~ $(REGEXP) ]] && echo true),true)
# Ensure that MET=geos5
REGEXP := ((^[Gg][Ee][Oo][Ss])?5|.5)
ifneq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
$(error When GRID=05x0666, you can only use MET=geos5)
endif
# Ensure that a nested-grid option is selected
ifndef NEST
$(error $(ERR_NEST))
else
NEST_NEEDED :=1
USER_DEFS += -DGRID05x0666
endif
endif
# %%%%% 0.25 x 0.3125 %%%%%
REGEXP :=(^025.03125|^0\.25.0\.3125)
ifeq ($(shell [[ "$(GRID)" =~ $(REGEXP) ]] && echo true),true)
# Ensure that MET=geos-fp
REGEXP :=(^[Gg][Ee][Oo][Ss][Ff][Pp])|(^[Gg][Ee][Oo][Ss].[Ff][Pp])
ifneq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
$(error When GRID=025x03125, you can only use MET=geos-fp)
endif
# Ensure that a nested-grid option is selected
ifndef NEST
$(error $(ERR_NEST))
else
NEST_NEEDED :=1
USER_DEFS += -DGRID025x03125
endif
endif
# %%%%% ERROR CHECK! Make sure our GRID selection is valid! %%%%%
REGEXP := ((\-DGRID)?4x5|2x25|1x125|05x0666|025x03125)
ifneq ($(shell [[ "$(USER_DEFS)" =~ $(REGEXP) ]] && echo true),true)
$(error $(ERR_GRID))
endif
#------------------------------------------------------------------------------
# Nested grid settings
#------------------------------------------------------------------------------
# %%%%% China (CH) %%%%%
REGEXP :=(^[Cc][Hh])
ifeq ($(shell [[ "$(NEST)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNESTED_CH
endif
# %%%%% Europe (EU) %%%%%
REGEXP :=(^[Ee][Uu])
ifeq ($(shell [[ "$(NEST)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNESTED_EU
endif
# %%%%% North America (NA) %%%%%
REGEXP :=(^[Nn][Aa])
ifeq ($(shell [[ "$(NEST)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNESTED_NA
endif
# %%%%% SE Asia (SE) %%%%%
REGEXP :=(^[Ss][Ee])
ifeq ($(shell [[ "$(NEST)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNESTED_SE
endif
# %%%%% ERROR CHECK! Make sure our NEST selection is valid! %%%%%
ifdef NEST_NEEDED
REGEXP :=((\-DNESTED_)?CH|NA|EU)
ifneq ($(shell [[ "$(USER_DEFS)" =~ $(REGEXP) ]] && echo true),true)
$(error $(ERR_NEST))
endif
endif
endif # NO_GRID_NEEDED
#------------------------------------------------------------------------------
# Coupled grid settings (yanyy,6/18/14)
#------------------------------------------------------------------------------
# %%%%% Couple %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(COUPLE)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE
endif
# %%%%% China (CH) and 4x5 %%%%%
REGEXP :=(^4.5[Cc][Hh]|^4\.0.5\.0[Cc][Hh])
ifeq ($(shell [[ "$(COUPLECH)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_4x5_CH
endif
# %%%%% Europe (EU) and 4x5 %%%%%
REGEXP :=(^4.5[Ee][Uu]|^4\.0.5\.0[Ee][Uu])
ifeq ($(shell [[ "$(COUPLEEU)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_4x5_EU
endif
# %%%%% North America (NA) and 4x5 %%%%%
REGEXP :=(^4.5[Nn][Aa]|^4\.0.5\.0[Nn][Aa])
ifeq ($(shell [[ "$(COUPLENA)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_4x5_NA
endif
# %%%%% SE Asia (SE) and 4x5 %%%%%
REGEXP :=(^4.5[Nn][Aa]|^4\.0.5\.0[Nn][Aa])
ifeq ($(shell [[ "$(COUPLESE)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_4x5_SE
endif
# %%%%% China (CH) and 2x2.5 %%%%%
REGEXP :=(^2.25[Cc][Hh]|^2.2\.5[Cc][Hh]|^2\.0.2\.5[Cc][Hh])
ifeq ($(shell [[ "$(COUPLECH)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_2x25_CH
endif
# %%%%% Europe (EU) and 2x2.5 %%%%%
REGEXP :=(^2.25[Ee][Uu]|^2.2\.5[Ee][Uu]|^2\.0.2\.5[Ee][Uu])
ifeq ($(shell [[ "$(COUPLEEU)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_2x25_EU
endif
# %%%%% North America (NA) and 2x2.5 %%%%%
REGEXP :=(^2.25[Nn][Aa]|^2.2\.5[Nn][Aa]|^2\.0.2\.5[Nn][Aa])
ifeq ($(shell [[ "$(COUPLENA)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_2x25_NA
endif
# %%%%% SE Asia (SE) and 2x2.5 %%%%%
REGEXP :=(^2.25[Nn][Aa]|^2.2\.5[Nn][Aa]|^2\.0.2\.5[Nn][Aa])
ifeq ($(shell [[ "$(COUPLESE)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_2x25_SE
endif
# %%%%% ERROR CHECK! Make sure our NEST selection is valid! %%%%%
ifdef COUPLE_NEEDED
REGEXP :=((\-DEXCHANGE_)?CH|NA|EU)
ifneq ($(shell [[ "$(USER_DEFS)" =~ $(REGEXP) ]] && echo true),true)
$(error $(ERR_COUPLE))
endif
endif
#------------------------------------------------------------------------------
# Aerosol microphysics settings
#------------------------------------------------------------------------------
# %%%%% TOMAS, 30 bins (default) %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TOMAS)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DTOMAS
endif
# %%%%% TOMAS, 40 bins %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TOMAS40)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DTOMAS -DTOMAS40
endif
# %%%%% TOMAS, 15 bins %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TOMAS15)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DTOMAS -DTOMAS15
endif
# %%%%% TOMAS, 12 bins %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TOMAS12)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DTOMAS -DTOMAS12
endif
# %%%%% APM %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(APM)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DAPM
endif
#------------------------------------------------------------------------------
# Special chemistry settings
#------------------------------------------------------------------------------
# Activate Global Terrestrial Mercury Model (GTMM) if necessary
GTMM_NEEDED :=0
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(GTMM_Hg)" =~ $(REGEXP) ]] && echo true),true)
GTMM_NEEDED :=1
USER_DEFS += -DGTMM_Hg
endif
# Option to turn off ISORROPIA for testing
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(NO_ISO)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNO_ISORROPIA
endif
# Specify year of tagged O3 prod/loss data
# NOTE: THIS IS OBSOLETE W/ HEMCO! (bmy, 11/21/14)
ifdef TAGO3YR
USER_DEFS += -DUSE_THIS_O3_YEAR=$(TAGO3YR)
endif
#------------------------------------------------------------------------------
# TAU Performance Profiling (only works w/ IFORT for now)
#------------------------------------------------------------------------------
ifeq ($(COMPILER),ifort)
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TAU_PROF)" =~ $(REGEXP) ]] && echo true),true)
COMPILE_CMD :=tau_f90.sh
endif
endif
###############################################################################
### ###
### Set linker commands for local and external libraries (incl. netCDF) ###
### ###
###############################################################################
# netCDF Library include path.
# Test if a separate netcdf-fortran library is specified.
ifdef GC_F_INCLUDE
NC_INC_CMD := -I$(GC_INCLUDE) -I$(GC_F_INCLUDE)
else
NC_INC_CMD := -I$(GC_INCLUDE)
endif
# Get the version number (e.g. "4130"=netCDF 4.1.3; "4200"=netCDF 4.2, etc.)
NC_VERSION :=$(shell $(GC_BIN)/nc-config --version)
NC_VERSION :=$(shell echo "$(NC_VERSION)" | sed 's|netCDF ||g')
NC_VERSION :=$(shell echo "$(NC_VERSION)" | sed 's|\.||g')
NC_VERSION_LEN :=$(shell perl -e "print length $(NC_VERSION)")
ifeq ($(NC_VERSION_LEN),3)
NC_VERSION :=$(NC_VERSION)0
endif
ifeq ($(NC_VERSION_LEN),2)
NC_VERSION :=$(NC_VERSION)00
endif
# Test if we have at least netCDF 4.2.0.0
AT_LEAST_NC_4200 :=$(shell perl -e "print ($(NC_VERSION) ge 4200)")
ifeq ($(AT_LEAST_NC_4200),1)
#-------------------------------------------------------------------------
# netCDF 4.2 and higher:
# Use "nf-config --flibs" and "nc-config --libs"
# Test if a separate netcdf-fortran path is specified
#-------------------------------------------------------------------------
ifdef GC_F_BIN
NC_LINK_CMD := $(shell $(GC_F_BIN)/nf-config --flibs)
else
NC_LINK_CMD := $(shell $(GC_BIN)/nf-config --flibs)
endif
NC_LINK_CMD += $(shell $(GC_BIN)/nc-config --libs)
else
#-----------------------------------------------------------------------
# Prior to netCDF 4.2:
# Use "nc-config --flibs" and nc-config --libs
#-----------------------------------------------------------------------
NC_LINK_CMD := $(shell $(GC_BIN)/nc-config --flibs)
NC_LINK_CMD += $(shell $(GC_BIN)/nc-config --libs)
endif
#=============================================================================
#%%%%% FIX FOR USE WITH THE GEOS-Chem-Libraries (bmy, 1/13/15)
#%%%%%
#%%%%% If your GEOS-Chem-Libraries netCDF/HDF5 package was built in one
#%%%%% directory and then moved somewhere else, then nf-config and nc-config
#%%%%% may not return the proper link directory path.
#%%%%%
#%%%%% To avoid this error, we shall test if the $GC_LIB environment variable
#%%%%% contains the text "GEOS-Chem-Libraries". (Recall that $GC_LIB is
#%%%%% defined in either your .bashrc or .cshrc file depending on which Unix
#%%%%% shell you use.) If we find the text "GEOS-Chem-Libraries" in $GC_LIB,
#%%%%% then we shall override the library path returned by nf-config and
#%%%%% nc-config with the path specified by $GC_LIB. This will ensure that
#%%%%% we point to the location where the GEOS-Chem-Libraries are installed.
#%%%%%
#%%%%% NOTE: This fix should work for most users. If it does not work, then
#%%%%% contact the GEOS-Chem Support Team ([email protected]).
#%%%%%
REGEXP :="GEOS-Chem-Libraries"
ifeq ($(shell [[ "$(GC_LIB)" =~ $(REGEXP) ]] && echo true),true)
NC_LINK_CMD := $(filter -l%,$(NC_LINK_CMD))
NC_LINK_CMD :=-L$(GC_LIB) $(NC_LINK_CMD)
endif
#=============================================================================
# Save for backwards compatibility
NCL := $(NC_LINK_CMD)
#----------------------------
# For GEOS-Chem
#----------------------------
# Base linker command: specify the library directory
LINK :=-L$(LIB)
# Append library for GTMM, if necessary
ifeq ($(GTMM_NEEDED),1)
LINK :=$(LINK) -lHg
endif
# Append library for RRTMG, if necessary
ifeq ($(RRTMG_NEEDED),1)
LINK :=$(LINK) -lrad
endif
# Create linker command to create the GEOS-Chem executable
LINK :=$(LINK) -lIsoropia -lHCOI -lHCOX -lHCO -lGeosUtil -lKpp
LINK :=$(LINK) -lHeaders -lNcUtils $(NC_LINK_CMD)
#----------------------------
# For the HEMCO standalone
#----------------------------
# Create linker command to create the HEMCO standalone executable
LINK_HCO :=-L$(LIB) -lHCOI -lHCOX -lHCO -lGeosUtil -lHeaders
LINK_HCO :=$(LINK_HCO) -lNcUtils $(NC_LINK_CMD)
###############################################################################
### ###
### HPC Settings: Build & use ESMF & MAPL for Grid-Independent GEOS-Chem ###
### ###
###############################################################################
# If we are building w/ the HPC target, then include GIGC.mk as well
# Determine if we are building with the hpc target
ifeq ($(HPC),yes)
ifneq ("$(wildcard $(CURDIR)/../GIGC/GIGC.mk)","")
include $(CURDIR)/../GIGC/GIGC.mk
else
ifneq ("$(wildcard $(CURDIR)/../../GIGC/GIGC.mk)","")
include $(CURDIR)/../../GIGC/GIGC.mk
else
$(error $(ERR_GIGC))
endif
endif
#FFLAGS += -double-size 32 -real-size 32 -r4
endif
###############################################################################
### ###
### IFORT compilation options. This is the default compiler. ###
### ###
###############################################################################
ifeq ($(COMPILER),ifort)
# Default optimization level for all routines (-O2)
ifndef OPT
OPT := -O2
endif
# Pick compiler options for debug run or regular run
REGEXP := (^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(DEBUG)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS :=-cpp -w -O0 -auto -noalign -convert big_endian
FFLAGS += -g -check arg_temp_created -debug all
TRACEBACK := yes
USER_DEFS += -DDEBUG
else
FFLAGS :=-cpp -w $(OPT) -auto -noalign -convert big_endian
FFLAGS += -vec-report0
endif
# Prevent any optimizations that would change numerical results
FFLAGS += -fp-model source
# Turn on OpenMP parallelization
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(OMP)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS += -openmp
endif
# Get Operating System (Linux = Linux; Darwin = MacOSX)
ifndef UNAME
UNAME :=$(shell uname)
endif
# OSX compilation options
ifeq ($(UNAME),Darwin)
FFLAGS += -Wl,-stack_size,0x2cb410000 # 12 GB of stack space
ifdef DEBUG
FFLAGS += -g0 -debug -save-temps -fpic -Wl,-no_pie
endif
endif
# Add options for medium memory model. This is to prevent G-C from
# running out of memory at hi-res, especially when using netCDF I/O.
ifneq ($(UNAME),Darwin)
FFLAGS += -mcmodel=medium -shared-intel
endif
# Turn on checking for floating-point exceptions
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(FPE)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS += -fpe0 -ftrapuv
endif
ifeq ($(shell [[ "$(FPEX)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS += -fpe0 -ftrapuv
endif
# Add special IFORT optimization commands
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(IPO)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS += -ipo -static
endif
# Add option for "array out of bounds" checking
REGEXP := (^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(BOUNDS)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS += -check bounds
endif
# Also add traceback option
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TRACEBACK)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS += -traceback
endif
# Loosen KPP tolerances upon non-convergence and try again
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(KPP_SOLVE_ALWAYS)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DKPP_SOLVE_ALWAYS
endif
# Add flexible precision declaration
ifeq ($(PRECISION),8)
USER_DEFS += -DUSE_REAL8
endif
# Append the user options in USER_DEFS to FFLAGS
FFLAGS += $(USER_DEFS)
# Include options (i.e. for finding *.h, *.mod files)
INCLUDE :=-module $(MOD) $(NC_INC_CMD)
# Do not append the ESMF/MAPL/FVDYCORE includes for ISORROPIA, because it
# will not compile. ISORROPIA is slated for removal shortly. (bmy, 11/21/14)
INCLUDE_ISO :=$(INCLUDE)
# Append the ESMF/MAPL/FVDYCORE include commands
ifeq ($(HPC),yes)
INCLUDE += $(MAPL_INC) $(ESMF_MOD) $(ESMF_INC) $(FV_INC)
endif
# Set the standard compiler variables
CC :=
F90 :=$(COMPILE_CMD) $(FFLAGS) $(INCLUDE)
F90ISO :=$(COMPILE_CMD) $(FFLAGS) $(INCLUDE_ISO)
LD :=$(COMPILE_CMD) $(FFLAGS)
FREEFORM := -free
#ifneq ($(shell [[ "$(HPC)" =~ $(REGEXP) ]] && echo true),true)
#ifneq ($(HPC),yes)
R8 := -r8
#endif
endif
###############################################################################
### ###
### Portland Group (PGF90) compilation options ###
### ###
###############################################################################
ifeq ($(COMPILER),pgi)
# Default optimization level for all routines (-fast)
ifndef OPT
OPT :=-fast
endif
# Pick compiler options for debug run or regular run
REGEXP := (^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(DEBUG)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS :=-byteswapio -Mpreprocess -Bstatic -g -O0
USER_DEFS += -DDEBUG
else
FFLAGS :=-byteswapio -Mpreprocess -Bstatic $(OPT)
endif
# Add options for medium memory model. This is to prevent G-C from
# running out of memory at hi-res, especially when using netCDF I/O.
FFLAGS += -mcmodel=medium
# Turn on OpenMP parallelization
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(OMP)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS += -mp -Mnosgimp -Dmultitask