pixy 1.0.1.beta1

• Fixed missing comma in setup.py (see #24)

pixy 1.0.0.beta1

We are pleased to announce the release of pixy version 1.0.0.beta1! This version is a major upgrade of the core functionality of pixy, and contains breaking changes. All main numerical results of pixy remain unchanged. A full description of the new release is available at https://pixy.readthedocs.io/en/master/changelog.html.

This release has a number of exciting features that increase performance and flexibility. Among these are:

• A ~3x speed up in single core performance
• Large decreases in memory overhead, and finer control of memory usage
• Multicore support on Linux and MacOS
• BED file support

Note: we have also removed several features we believe are better achieved with existing tools, notably VCF filtration, and the use of Zarr intermediates. For a full discussion of removed features, please see the changelog linked above.

pixy 0.95.02

No changes, release made to create static Zenodo DOI for version of pixy used in the Mol Ecol Resources manuscript.

pixy 0.95.01

• fix broken help message

pixy 0.95.0

• refactored the genotype filtering code
• added a check for invariant sites (and option to bypass)
• added ability to bypass genotype filtration
• fixed pre-processing of SNPs for FST calculation (broken in last build)

pixy 0.94.11

• fix for dxy window sizes (off by one)

pixy 0.94.1

• added checks for non-existent VCF or population files
• reduced the overwriting/removal of old pixy output data
• cleaned up error messages
• new ASCII help text image

pixy 0.94.05

• filtration bypass now functions correctly
• better warnings for missing filtration expressions

pixy 0.94.04

• reverting multicore changes

pixy 0.94.03

• fix for pickling issue on mac os