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sofia_final_template.par
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### ____________________________________________________________________ ###
### ###
### SoFiA 2.1.1 (default_parameters.par) - Source Finding Application ###
### Copyright (C) 2020 Tobias Westmeier ###
### ____________________________________________________________________ ###
### ###
### Address: Tobias Westmeier ###
### ICRAR M468 ###
### The University of Western Australia ###
### 35 Stirling Highway ###
### Crawley WA 6009 ###
### Australia ###
### ###
### E-mail: tobias.westmeier [at] uwa.edu.au ###
### ____________________________________________________________________ ###
### ###
### This program is free software: you can redistribute it and/or modify ###
### it under the terms of the GNU General Public License as published by ###
### the Free Software Foundation, either version 3 of the License, or ###
### (at your option) any later version. ###
### ###
### This program is distributed in the hope that it will be useful, ###
### but WITHOUT ANY WARRANTY; without even the implied warranty of ###
### MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ###
### GNU General Public License for more details. ###
### ###
### You should have received a copy of the GNU General Public License ###
### along with this program. If not, see http://www.gnu.org/licenses/. ###
### ____________________________________________________________________ ###
### ###
# Default parameter settings for Apertif for individual beams
# Please do not modify!
# Global settings
pipeline.verbose = false
pipeline.pedantic = true # Keep this true! Detects new *big* features in SoFiA
pipeline.threads = 10
# Input
input.data = /PATH/TASKID/BEAM/HI_image_cubeN.fits
input.region =
input.gain =
input.noise =
input.weights =
input.mask = /PATH/TASKID/BEAM/HI_mask_cubeN.fits
input.invert = false
# Flagging
flag.region =
flag.catalog =
flag.radius = 0
flag.auto = false
flag.threshold = 5.0
flag.log = false
# Continuum subtraction
contsub.enable = false
contsub.order = 0
contsub.threshold = 2.0
contsub.shift = 4
contsub.padding = 3
# Noise scaling
scaleNoise.enable = false
scaleNoise.mode = spectral #local
scaleNoise.statistic = mad
scaleNoise.fluxRange = negative
scaleNoise.windowXY = 400 # 25
scaleNoise.windowZ = 200 # 15
scaleNoise.gridXY = 0
scaleNoise.gridZ = 0
scaleNoise.interpolate = false
scaleNoise.scfind = true
# Ripple filter
rippleFilter.enable = false
rippleFilter.statistic = median
rippleFilter.windowXY = 31
rippleFilter.windowZ = 15
rippleFilter.gridXY = 0
rippleFilter.gridZ = 0
rippleFilter.interpolate = false
# S+C finder
scfind.enable = false
scfind.kernelsXY = 0, 3, 6
scfind.kernelsZ = 0, 3, 7
scfind.threshold = 3.8
scfind.replacement = 2.0
scfind.statistic = mad
scfind.fluxRange = negative
# Threshold finder
threshold.enable = false
threshold.threshold = 5.0
threshold.mode = relative
threshold.statistic = mad
threshold.fluxRange = negative
# Linker
linker.enable = true
linker.radiusXY = 2
linker.radiusZ = 8 # Covering at least ~56 km/s at 7 km/s resolution
linker.minSizeXY = 5
linker.minSizeZ = 5
linker.maxSizeXY = 300
linker.maxSizeZ = 140
linker.minPixels = 0
linker.maxPixels = 0
linker.minFill = 0.0
linker.maxFill = 0.0
linker.positivity = false
linker.keepNegative = false
# Reliability
reliability.enable = false
reliability.parameters = peak, sum, mean
reliability.threshold = 0.85
reliability.scaleKernel = 0.2
reliability.minSNR = 12.0
reliability.minPixels = 200
reliability.autoKernel = true
reliability.iterations = 30
reliability.tolerance = 0.05
reliability.catalog =
reliability.plot = true
reliability.debug = false
# Mask dilation
dilation.enable = false
dilation.iterationsXY = 10
dilation.iterationsZ = 5
dilation.threshold = 0.001
# Parameterisation
parameter.enable = true
parameter.wcs = true
parameter.physical = true
parameter.prefix = SoFiA
parameter.offset = true
# Output
output.directory =
output.filename =
output.writeCatASCII = true
output.writeCatXML = true
output.writeCatSQL = false
output.writeNoise = false
output.writeFiltered = false
output.writeMask = true
output.writeMask2d = true
output.writeRawMask = false
output.writeMoments = false
output.writeCubelets = true
output.marginCubelets = 10
output.thresholdMom12 = 0.0
output.overwrite = true
# Updated parameters