From 9ad703e5fd0f546a3d49f671b04f1119732f67ab Mon Sep 17 00:00:00 2001
From: Evans Girard <54366437+evans-g-crsj@users.noreply.github.com>
Date: Tue, 26 Mar 2024 09:57:42 -0400
Subject: [PATCH] :wrench: Add helper script to check aliases and releases
 (#127)

* :wrench: Add helper script to check aliases and releases

* :bug: Remove unnessary arg

* :pen: Add more details to checkAliasWithRelease script
---
 admin/checkAliasWithRelease.mjs    | 42 ++++++++++++++++++++++++++++++
 admin/findClinicalIndicesUsage.mjs |  5 ++++
 2 files changed, 47 insertions(+)
 create mode 100644 admin/checkAliasWithRelease.mjs

diff --git a/admin/checkAliasWithRelease.mjs b/admin/checkAliasWithRelease.mjs
new file mode 100644
index 0000000..da190a0
--- /dev/null
+++ b/admin/checkAliasWithRelease.mjs
@@ -0,0 +1,42 @@
+import { Client } from '@elastic/elasticsearch';
+import { esHost } from '../dist/src/env.js';
+import assert from 'node:assert/strict';
+
+const cbKeepClinicalIndicesOnly = x =>
+    ['file', 'biospecimen', 'participant', 'study'].some(stem => x.index.includes(stem));
+
+const client = new Client({ node: esHost });
+
+const rAllAliases = await client.cat.aliases({
+    h: 'alias,index',
+    format: 'json',
+});
+
+assert(rAllAliases.statusCode === 200);
+
+const allAliases = rAllAliases.body;
+const hasNext = allAliases.some(x => x.alias.includes('next_'));
+const clinicalAliases = allAliases
+    .filter(cbKeepClinicalIndicesOnly)
+    .filter(x => (hasNext ? x.alias.includes('next_') : x));
+
+const aliasToReleases = clinicalAliases.reduce((xs, x) => {
+    const r = 're' + x.index.split('_re_')[1];
+    const v = [...new Set(xs[x.alias] ? [...xs[x.alias], r] : [r])];
+    return {
+        ...xs,
+        [x.alias]: v,
+        all: v,
+    };
+}, {});
+
+const { all, ...entities } = aliasToReleases;
+console.log(`\n`);
+
+//not the best test but it should suffice
+const ok = hasNext ? all.length === 1 : all.length <= 2
+if (!ok) {
+    console.warn('Check if the clinical aliases are ok - There might be a problem')
+}
+console.log(`Release(s) found: ${all}`);
+console.log(entities);
diff --git a/admin/findClinicalIndicesUsage.mjs b/admin/findClinicalIndicesUsage.mjs
index e8a9e7a..9f018a5 100644
--- a/admin/findClinicalIndicesUsage.mjs
+++ b/admin/findClinicalIndicesUsage.mjs
@@ -41,6 +41,11 @@ const makeReleaseToCreationDate = l =>
 
 const clinicalIndicesNotAliased = clinicalIndices.filter(x => clinicalAliases.every(a => a.index !== x.index));
 const unaliasedClinicalIndicesWithCreationDate = makeReleaseToCreationDate(clinicalIndicesNotAliased);
+
+// Make sure that no aliased index contains previously found unaliased releases.
+const unaliasedReleases = unaliasedClinicalIndicesWithCreationDate.map(x => x.release)
+assert(clinicalAliases.every(x => !unaliasedReleases.includes(`re_${x.index.split('re_')[1]}`)))
+
 console.log(`===== Not Aliased`);
 
 unaliasedClinicalIndicesWithCreationDate.length