From 78b00386267ff95f501b1783b2c5c9bce5b27cdc Mon Sep 17 00:00:00 2001
From: Jason Kai <tkai@uwo.ca>
Date: Wed, 8 Feb 2023 10:02:23 -0500
Subject: [PATCH 1/2] generalize README

- remove mention of ZI, and make more general (e.g. structure / region
of interest)
- left mention of `pythondeps-zonaconn` due to necessity for workflow

TODO: Add badge for zenodo doi
---
 README.md | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/README.md b/README.md
index 058e4f0..077c796 100644
--- a/README.md
+++ b/README.md
@@ -1,20 +1,20 @@
-# Snakemake workflow: zonaconn-smk
-Snakemake workflow for diffusion and functional connectivity with 
-the zona incerta. 
+# Snakemake workflow: subcorticalparc-smk
+Snakemake workflow for identifying structural and functional connectivity with 
+regions/structures of interest. 
 
 _This workflow is currently customized to run with data from the HCP1200 7T_
 
 ## Description
 Using the HCP-MMP cortical parcellation (180 regions, left/right sym labels) 
-as targets and performs probabilistic tracking from the zona incerta seed in 
-each subject's native space. The connectivity data from seed voxels are brought
-into the template space to perform spectral clustering on the concatenated 
-feature vectors to parcellate into `k` regions.
+as targets and performs probabilistic tracking from the region / structure of 
+interest seed in each subject's native space. The connectivity data from seed 
+voxels are brought into the template space to perform spectral clustering on 
+the concatenated feature vectors to parcellate into `k` regions.
 
 <!-- To be updated -->
 ### Inputs
-- Probabilistic segmentation(s) as 3D NIFTI for ZI on a single MNI template 
-space
+- Probabilistic segmentation(s) as 3D NIFTI for region/structure of interest 
+on a single MNI template space
 - participants.tsv with target subject IDs
 - For each target subject:
   - Freesurfer processed data

From 620e5ef35921ca16ed89e4a353472fe6d07d8d9d Mon Sep 17 00:00:00 2001
From: Jason Kai <tkai@uwo.ca>
Date: Wed, 8 Feb 2023 10:08:21 -0500
Subject: [PATCH 2/2] update to v0.1.0

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index df4df45..1383b40 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "zonaconn-smk"
-version = "0.1.0-pre-1"
+version = "0.1.0"
 description = "Snakemake workflow to identify connectivity to the zona incerta"
 authors = [
     "Ali Khan",