phipo.obo

format-version: 1.2
data-version: releases/2018-11-09
import: http://purl.obolibrary.org/obo/phipo/imports/chebi_import.owl
import: http://purl.obolibrary.org/obo/phipo/imports/go_import.owl
import: http://purl.obolibrary.org/obo/phipo/imports/ido_import.owl
import: http://purl.obolibrary.org/obo/phipo/imports/pato_import.owl
import: http://purl.obolibrary.org/obo/phipo/imports/ro_import.owl
import: http://purl.obolibrary.org/obo/phipo/imports/so_import.owl
ontology: phipo
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-07-09T13:43:00Z xsd:string
owl-axioms: Prefix(owl:=<http://www.w3.org/2002/07/owl#>)\nPrefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)\nPrefix(xml:=<http://www.w3.org/XML/1998/namespace>)\nPrefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)\nPrefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)\n\n\nOntology(\nDeclaration(Class(<http://purl.obolibrary.org/obo/BFO_0000001>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/CHEBI_24431>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/CHEBI_36342>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/CHEBI_50906>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/GO_0004872>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/GO_0005575>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/PHIPO_0000001>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/PHIPO_0000002>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/PHIPO_0000003>))\n############################\n#   Classes\n############################\n\n# Class: <http://purl.obolibrary.org/obo/BFO_0000001> (entity)\n\nSubClassOf(<http://purl.obolibrary.org/obo/BFO_0000001> owl:Thing)\n\n# Class: <http://purl.obolibrary.org/obo/CHEBI_24431> (chemical entity)\n\nSubClassOf(<http://purl.obolibrary.org/obo/CHEBI_24431> owl:Thing)\n\n# Class: <http://purl.obolibrary.org/obo/CHEBI_36342> (subatomic particle)\n\nSubClassOf(<http://purl.obolibrary.org/obo/CHEBI_36342> owl:Thing)\n\n# Class: <http://purl.obolibrary.org/obo/CHEBI_50906> (role)\n\nSubClassOf(<http://purl.obolibrary.org/obo/CHEBI_50906> owl:Thing)\n\n# Class: <http://purl.obolibrary.org/obo/GO_0004872> (<http://purl.obolibrary.org/obo/GO_0004872>)\n\nSubClassOf(<http://purl.obolibrary.org/obo/GO_0004872> owl:Thing)\n\n# Class: <http://purl.obolibrary.org/obo/GO_0005575> (cellular_component)\n\nSubClassOf(<http://purl.obolibrary.org/obo/GO_0005575> owl:Thing)\n\n# Class: <http://purl.obolibrary.org/obo/PHIPO_0000001> (pathogen host interaction phenotype)\n\nSubClassOf(<http://purl.obolibrary.org/obo/PHIPO_0000001> owl:Thing)\n\n# Class: <http://purl.obolibrary.org/obo/PHIPO_0000002> (pathogen phenotype)\n\nSubClassOf(<http://purl.obolibrary.org/obo/PHIPO_0000002> owl:Thing)\n\n# Class: <http://purl.obolibrary.org/obo/PHIPO_0000003> (host phenotype)\n\nSubClassOf(<http://purl.obolibrary.org/obo/PHIPO_0000003> owl:Thing)\n\n\n)

[Term]
id: BFO:0000002
is_a: BFO:0000001

[Term]
id: BFO:0000003
is_a: BFO:0000001

[Term]
id: BFO:0000004
is_a: BFO:0000002

[Term]
id: BFO:0000015
is_a: BFO:0000003

[Term]
id: BFO:0000016
is_a: BFO:0000017

[Term]
id: BFO:0000017
is_a: BFO:0000020

[Term]
id: BFO:0000020
is_a: BFO:0000002

[Term]
id: BFO:0000023
is_a: BFO:0000017

[Term]
id: BFO:0000031
is_a: BFO:0000002

[Term]
id: BFO:0000040
is_a: BFO:0000004

[Term]
id: CARO:0000000
is_a: CARO:0030000

[Term]
id: CARO:0000003
is_a: CARO:0000006

[Term]
id: CARO:0000006
is_a: BFO:0000040
is_a: CARO:0000000

[Term]
id: CARO:0030000
is_a: BFO:0000004

[Term]
id: CHEBI:10545
is_a: CHEBI:36338

[Term]
id: CHEBI:22712
is_a: CHEBI:33836

[Term]
id: CHEBI:23116
is_a: BFO:0000004
is_a: CHEBI:24473

[Term]
id: CHEBI:23117
is_a: CHEBI:24471

[Term]
id: CHEBI:23132
is_a: CHEBI:22712
is_a: CHEBI:36683

[Term]
id: CHEBI:23367
is_a: BFO:0000040
is_a: CHEBI:24431

[Term]
id: CHEBI:23924
is_a: CHEBI:35222
is_a: CHEBI:52206

[Term]
id: CHEBI:24127
is_a: CHEBI:25944
is_a: CHEBI:35718

[Term]
id: CHEBI:24432
is_a: CHEBI:50906

[Term]
id: CHEBI:24433
is_a: CHEBI:24431

[Term]
id: CHEBI:24471
is_a: CHEBI:33675

[Term]
id: CHEBI:24473
is_a: CHEBI:25585
is_a: CHEBI:33560

[Term]
id: CHEBI:24532
is_a: CHEBI:33285
is_a: CHEBI:33832
is_a: CHEBI:5686

[Term]
id: CHEBI:24651
is_a: CHEBI:25806
is_a: CHEBI:33608
is_a: CHEBI:37577

[Term]
id: CHEBI:24835
is_a: CHEBI:23367

[Term]
id: CHEBI:25367
is_a: CHEBI:36357

[Term]
id: CHEBI:25555
is_a: BFO:0000004
is_a: CHEBI:25585
is_a: CHEBI:33300

[Term]
id: CHEBI:25585
is_a: CHEBI:33250

[Term]
id: CHEBI:25805
is_a: BFO:0000004
is_a: CHEBI:25585
is_a: CHEBI:33303

[Term]
id: CHEBI:25806
is_a: CHEBI:33304

[Term]
id: CHEBI:25944
is_a: CHEBI:33232

[Term]
id: CHEBI:26878
is_a: CHEBI:30879

[Term]
id: CHEBI:27027
is_a: CHEBI:33284

[Term]
id: CHEBI:27594
is_a: BFO:0000004
is_a: CHEBI:25585
is_a: CHEBI:33306

[Term]
id: CHEBI:30879
is_a: CHEBI:33822

[Term]
id: CHEBI:33232
is_a: CHEBI:50906

[Term]
id: CHEBI:33233
is_a: CHEBI:36342

[Term]
id: CHEBI:33246
is_a: CHEBI:24433

[Term]
id: CHEBI:33250
is_a: CHEBI:24431

[Term]
id: CHEBI:33252
is_a: CHEBI:36347

[Term]
id: CHEBI:33253
is_a: CHEBI:36339
is_a: CHEBI:36347

[Term]
id: CHEBI:33281
is_a: CHEBI:24432

[Term]
id: CHEBI:33284
is_a: CHEBI:78295

[Term]
id: CHEBI:33285
is_a: CHEBI:50860

[Term]
id: CHEBI:33286
is_a: CHEBI:33232

[Term]
id: CHEBI:33300
is_a: CHEBI:33560

[Term]
id: CHEBI:33302
is_a: CHEBI:33675

[Term]
id: CHEBI:33303
is_a: CHEBI:33560

[Term]
id: CHEBI:33304
is_a: CHEBI:33675

[Term]
id: CHEBI:33306
is_a: CHEBI:33560

[Term]
id: CHEBI:33318
is_a: CHEBI:33250

[Term]
id: CHEBI:33559
is_a: CHEBI:33250

[Term]
id: CHEBI:33560
is_a: CHEBI:33318

[Term]
id: CHEBI:33579
is_a: CHEBI:23367

[Term]
id: CHEBI:33582
is_a: CHEBI:33675

[Term]
id: CHEBI:33595
is_a: CHEBI:25367

[Term]
id: CHEBI:33597
is_a: CHEBI:33595

[Term]
id: CHEBI:33598
is_a: CHEBI:33597
is_a: CHEBI:33832

[Term]
id: CHEBI:33608
is_a: CHEBI:33674

[Term]
id: CHEBI:33655
is_a: CHEBI:33595

[Term]
id: CHEBI:33659
is_a: CHEBI:33655
is_a: CHEBI:33832

[Term]
id: CHEBI:33674
is_a: CHEBI:33579

[Term]
id: CHEBI:33675
is_a: CHEBI:33579

[Term]
id: CHEBI:33822
is_a: CHEBI:24651
is_a: CHEBI:50860

[Term]
id: CHEBI:33832
is_a: CHEBI:33595
is_a: CHEBI:72695

[Term]
id: CHEBI:33833
is_a: CHEBI:24532
is_a: CHEBI:33659

[Term]
id: CHEBI:33836
is_a: CHEBI:33598
is_a: CHEBI:33659

[Term]
id: CHEBI:33937
is_a: CHEBI:33284

[Term]
id: CHEBI:35222
is_a: CHEBI:24432

[Term]
id: CHEBI:35352
is_a: CHEBI:33285
is_a: CHEBI:51143

[Term]
id: CHEBI:35703
is_a: CHEBI:24432

[Term]
id: CHEBI:35718
is_a: CHEBI:33281

[Term]
id: CHEBI:35727
is_a: CHEBI:68452

[Term]
id: CHEBI:36338
is_a: CHEBI:33233
is_a: CHEBI:36340

[Term]
id: CHEBI:36339
is_a: CHEBI:36340
is_a: CHEBI:36344

[Term]
id: CHEBI:36340
is_a: CHEBI:36342

[Term]
id: CHEBI:36343
is_a: CHEBI:36342

[Term]
id: CHEBI:36344
is_a: CHEBI:36343

[Term]
id: CHEBI:36347
is_a: CHEBI:36342

[Term]
id: CHEBI:36357
is_a: CHEBI:23367

[Term]
id: CHEBI:36683
is_a: CHEBI:23117
is_a: CHEBI:36684

[Term]
id: CHEBI:36684
is_a: CHEBI:33285
is_a: CHEBI:37578

[Term]
id: CHEBI:37577
is_a: CHEBI:36357

[Term]
id: CHEBI:37578
is_a: CHEBI:24471
is_a: CHEBI:37577

[Term]
id: CHEBI:38101
is_a: CHEBI:24532
is_a: CHEBI:35352

[Term]
id: CHEBI:38179
is_a: CHEBI:33833

[Term]
id: CHEBI:43176
is_a: CHEBI:33246

[Term]
id: CHEBI:49637
is_a: CHEBI:24835
is_a: CHEBI:25585
is_a: CHEBI:33559

[Term]
id: CHEBI:50860
is_a: CHEBI:33582

[Term]
id: CHEBI:50908
is_a: CHEBI:52209

[Term]
id: CHEBI:51086
is_a: CHEBI:50906

[Term]
id: CHEBI:51143
is_a: CHEBI:33302

[Term]
id: CHEBI:51454
is_a: CHEBI:33598

[Term]
id: CHEBI:52206
is_a: CHEBI:24432

[Term]
id: CHEBI:52209
is_a: CHEBI:24432

[Term]
id: CHEBI:52211
is_a: CHEBI:24432

[Term]
id: CHEBI:5686
is_a: CHEBI:33595

[Term]
id: CHEBI:59999
is_a: CHEBI:24431

[Term]
id: CHEBI:60004
is_a: CHEBI:59999

[Term]
id: CHEBI:60915
is_a: CHEBI:60004

[Term]
id: CHEBI:68452
is_a: CHEBI:38101
is_a: CHEBI:38179

[Term]
id: CHEBI:72695
is_a: CHEBI:25367
is_a: CHEBI:50860

[Term]
id: CHEBI:75282
is_a: CHEBI:83317

[Term]
id: CHEBI:76725
is_a: CHEBI:23924

[Term]
id: CHEBI:76741
is_a: CHEBI:76725

[Term]
id: CHEBI:76841
is_a: CHEBI:76741

[Term]
id: CHEBI:77884
is_a: CHEBI:76841
is_a: CHEBI:83734

[Term]
id: CHEBI:78295
is_a: CHEBI:52211

[Term]
id: CHEBI:78298
is_a: CHEBI:51086

[Term]
id: CHEBI:81758
is_a: CHEBI:60915
is_a: CHEBI:87067
is_a: CHEBI:87100

[Term]
id: CHEBI:83317
is_a: CHEBI:35222
is_a: CHEBI:52206

[Term]
id: CHEBI:83403
is_a: CHEBI:23132

[Term]
id: CHEBI:83734
is_a: CHEBI:35718
is_a: CHEBI:83317

[Term]
id: CHEBI:83748
is_a: CHEBI:26878
is_a: CHEBI:35727
is_a: CHEBI:51454
is_a: CHEBI:83403

[Term]
id: CHEBI:83749
is_a: CHEBI:83748

[Term]
id: CHEBI:83750
is_a: CHEBI:83748

[Term]
id: CHEBI:83752
is_a: CHEBI:83748

[Term]
id: CHEBI:83753
is_a: CHEBI:83748

[Term]
id: CHEBI:86323
is_a: CHEBI:68452

[Term]
id: CHEBI:86328
is_a: CHEBI:24127
is_a: CHEBI:33286

[Term]
id: CHEBI:86426
is_a: CHEBI:35727

[Term]
id: CHEBI:87067
is_a: CHEBI:86323

[Term]
id: CHEBI:87100
is_a: CHEBI:86426

[Term]
id: GO:0003674
is_a: BFO:0000015

[Term]
id: GO:0003676
is_a: GO:0097159
is_a: GO:1901363

[Term]
id: GO:0003677
is_a: GO:0003676

[Term]
id: GO:0003723
is_a: GO:0003676

[Term]
id: GO:0003824
is_a: GO:0003674

[Term]
id: GO:0005102
is_a: GO:0005515

[Term]
id: GO:0005488
is_a: GO:0003674

[Term]
id: GO:0005515
is_a: GO:0005488

[Term]
id: GO:0006403
is_a: GO:0033036

[Term]
id: GO:0006793
is_a: GO:0044237

[Term]
id: GO:0006796
is_a: GO:0006793

[Term]
id: GO:0006810
is_a: GO:0051234

[Term]
id: GO:0006897
is_a: GO:0016192
is_a: GO:0098657

[Term]
id: GO:0006900
is_a: GO:0016050
is_a: GO:0061024

[Term]
id: GO:0006996
is_a: GO:0016043

[Term]
id: GO:0007034
is_a: GO:0006810

[Term]
id: GO:0007154
is_a: GO:0009987

[Term]
id: GO:0007165
is_a: GO:0009987
is_a: GO:0050794

[Term]
id: GO:0008104
is_a: GO:0033036

[Term]
id: GO:0008150
is_a: BFO:0000015

[Term]
id: GO:0008152
is_a: GO:0008150

[Term]
id: GO:0009892
is_a: GO:0019222
is_a: GO:0048519

[Term]
id: GO:0009893
is_a: GO:0019222
is_a: GO:0048518

[Term]
id: GO:0009966
is_a: GO:0010646
is_a: GO:0023051
is_a: GO:0048583

[Term]
id: GO:0009967
is_a: GO:0009966
is_a: GO:0010647
is_a: GO:0023056
is_a: GO:0048584

[Term]
id: GO:0009968
is_a: GO:0009966
is_a: GO:0010648
is_a: GO:0023057
is_a: GO:0048585

[Term]
id: GO:0009987
is_a: GO:0008150

[Term]
id: GO:0010324
is_a: GO:0061024

[Term]
id: GO:0010469
is_a: GO:0009966
is_a: GO:0065009

[Term]
id: GO:0010562
is_a: GO:0031325
is_a: GO:0051174

[Term]
id: GO:0010563
is_a: GO:0031324
is_a: GO:0051174

[Term]
id: GO:0010638
is_a: GO:0033043
is_a: GO:0051130

[Term]
id: GO:0010639
is_a: GO:0033043
is_a: GO:0051129

[Term]
id: GO:0010646
is_a: GO:0050794

[Term]
id: GO:0010647
is_a: GO:0010646
is_a: GO:0048522

[Term]
id: GO:0010648
is_a: GO:0010646
is_a: GO:0048523

[Term]
id: GO:0015031
is_a: GO:0015833
is_a: GO:0045184

[Term]
id: GO:0015833
is_a: GO:0042886
is_a: GO:0071702

[Term]
id: GO:0016043
is_a: GO:0009987
is_a: GO:0071840

[Term]
id: GO:0016050
is_a: GO:0006996

[Term]
id: GO:0016192
is_a: GO:0006810

[Term]
id: GO:0016301
is_a: GO:0016772

[Term]
id: GO:0016310
is_a: GO:0006796

[Term]
id: GO:0016740
is_a: GO:0003824

[Term]
id: GO:0016772
is_a: GO:0016740

[Term]
id: GO:0018995
is_a: GO:0044215

[Term]
id: GO:0019220
is_a: GO:0051174

[Term]
id: GO:0019222
is_a: GO:0050789

[Term]
id: GO:0023051
is_a: GO:0050789

[Term]
id: GO:0023052
is_a: GO:0008150

[Term]
id: GO:0023056
is_a: GO:0023051
is_a: GO:0048518

[Term]
id: GO:0023057
is_a: GO:0023051
is_a: GO:0048519

[Term]
id: GO:0030100
is_a: GO:0051128
is_a: GO:0060627

[Term]
id: GO:0030545
is_a: GO:0098772

[Term]
id: GO:0031323
is_a: GO:0019222
is_a: GO:0050794

[Term]
id: GO:0031324
is_a: GO:0009892
is_a: GO:0031323
is_a: GO:0048523

[Term]
id: GO:0031325
is_a: GO:0009893
is_a: GO:0031323
is_a: GO:0048522

[Term]
id: GO:0031503
is_a: GO:0008104

[Term]
id: GO:0032091
is_a: GO:0043393
is_a: GO:0051100

[Term]
id: GO:0032092
is_a: GO:0043393
is_a: GO:0051099

[Term]
id: GO:0032879
is_a: GO:0050789

[Term]
id: GO:0032880
is_a: GO:0032879

[Term]
id: GO:0033036
is_a: GO:0051179

[Term]
id: GO:0033043
is_a: GO:0051128

[Term]
id: GO:0033365
is_a: GO:0034613

[Term]
id: GO:0033673
is_a: GO:0042326
is_a: GO:0043549
is_a: GO:0051348

[Term]
id: GO:0033674
is_a: GO:0042327
is_a: GO:0043549
is_a: GO:0051347

[Term]
id: GO:0034504
is_a: GO:0033365

[Term]
id: GO:0034613
is_a: GO:0008104
is_a: GO:0070727

[Term]
id: GO:0034629
is_a: GO:0031503
is_a: GO:0034613

[Term]
id: GO:0038023
is_a: GO:0060089

[Term]
id: GO:0042325
is_a: GO:0019220

[Term]
id: GO:0042326
is_a: GO:0042325
is_a: GO:0045936

[Term]
id: GO:0042327
is_a: GO:0042325
is_a: GO:0045937

[Term]
id: GO:0042886
is_a: GO:0071705

[Term]
id: GO:0043085
is_a: GO:0044093
is_a: GO:0050790

[Term]
id: GO:0043086
is_a: GO:0044092
is_a: GO:0050790

[Term]
id: GO:0043388
is_a: GO:0051099
is_a: GO:0051101

[Term]
id: GO:0043392
is_a: GO:0051100
is_a: GO:0051101

[Term]
id: GO:0043393
is_a: GO:0051098

[Term]
id: GO:0043549
is_a: GO:0042325
is_a: GO:0051338

[Term]
id: GO:0043900
is_a: GO:0050789

[Term]
id: GO:0043901
is_a: GO:0043900
is_a: GO:0048519

[Term]
id: GO:0043902
is_a: GO:0043900
is_a: GO:0048518

[Term]
id: GO:0043903
is_a: GO:0043900

[Term]
id: GO:0044092
is_a: GO:0065009

[Term]
id: GO:0044093
is_a: GO:0065009

[Term]
id: GO:0044215
is_a: GO:0005575

[Term]
id: GO:0044217
is_a: GO:0005575

[Term]
id: GO:0044237
is_a: GO:0008152
is_a: GO:0009987

[Term]
id: GO:0044403
is_a: GO:0044419

[Term]
id: GO:0044419
is_a: GO:0051704

[Term]
id: GO:0044877
is_a: GO:0005488

[Term]
id: GO:0045184
is_a: GO:0008104
is_a: GO:0051234

[Term]
id: GO:0045806
is_a: GO:0030100
is_a: GO:0051051
is_a: GO:0051129

[Term]
id: GO:0045807
is_a: GO:0030100
is_a: GO:0051050
is_a: GO:0051130

[Term]
id: GO:0045936
is_a: GO:0010563
is_a: GO:0019220

[Term]
id: GO:0045937
is_a: GO:0010562
is_a: GO:0019220

[Term]
id: GO:0048018
is_a: GO:0005102
is_a: GO:0030545

[Term]
id: GO:0048518
is_a: GO:0050789

[Term]
id: GO:0048519
is_a: GO:0050789

[Term]
id: GO:0048522
is_a: GO:0048518
is_a: GO:0050794

[Term]
id: GO:0048523
is_a: GO:0048519
is_a: GO:0050794

[Term]
id: GO:0048583
is_a: GO:0050789

[Term]
id: GO:0048584
is_a: GO:0048518
is_a: GO:0048583

[Term]
id: GO:0048585
is_a: GO:0048519
is_a: GO:0048583

[Term]
id: GO:0050789
is_a: GO:0065007

[Term]
id: GO:0050790
is_a: GO:0065009

[Term]
id: GO:0050794
is_a: GO:0050789

[Term]
id: GO:0050896
is_a: GO:0008150

[Term]
id: GO:0051049
is_a: GO:0032879

[Term]
id: GO:0051050
is_a: GO:0048518
is_a: GO:0051049

[Term]
id: GO:0051051
is_a: GO:0048519
is_a: GO:0051049

[Term]
id: GO:0051098
is_a: GO:0065009

[Term]
id: GO:0051099
is_a: GO:0044093
is_a: GO:0051098

[Term]
id: GO:0051100
is_a: GO:0044092
is_a: GO:0051098

[Term]
id: GO:0051101
is_a: GO:0051098

[Term]
id: GO:0051128
is_a: GO:0050794

[Term]
id: GO:0051129
is_a: GO:0048523
is_a: GO:0051128

[Term]
id: GO:0051130
is_a: GO:0048522
is_a: GO:0051128

[Term]
id: GO:0051174
is_a: GO:0031323

[Term]
id: GO:0051179
is_a: GO:0008150

[Term]
id: GO:0051222
is_a: GO:0051050
is_a: GO:0051223
is_a: GO:1904951

[Term]
id: GO:0051223
is_a: GO:0070201
is_a: GO:0090087

[Term]
id: GO:0051224
is_a: GO:0051051
is_a: GO:0051223
is_a: GO:1904950

[Term]
id: GO:0051234
is_a: GO:0051179

[Term]
id: GO:0051338
is_a: GO:0050790

[Term]
id: GO:0051347
is_a: GO:0043085
is_a: GO:0051338

[Term]
id: GO:0051348
is_a: GO:0043086
is_a: GO:0051338

[Term]
id: GO:0051641
is_a: GO:0051179

[Term]
id: GO:0051704
is_a: GO:0008150

[Term]
id: GO:0051716
is_a: GO:0009987
is_a: GO:0050896

[Term]
id: GO:0060089
is_a: GO:0003674

[Term]
id: GO:0060341
is_a: GO:0032879

[Term]
id: GO:0060627
is_a: GO:0050794
is_a: GO:0051049

[Term]
id: GO:0061024
is_a: GO:0016043

[Term]
id: GO:0065007
is_a: GO:0008150

[Term]
id: GO:0065009
is_a: GO:0065007

[Term]
id: GO:0070201
is_a: GO:0032880

[Term]
id: GO:0070727
is_a: GO:0033036
is_a: GO:0051641

[Term]
id: GO:0071702
is_a: GO:0006810

[Term]
id: GO:0071705
is_a: GO:0006810

[Term]
id: GO:0071840
is_a: GO:0008150

[Term]
id: GO:0085030
is_a: GO:0044403

[Term]
id: GO:0090087
is_a: GO:0051049

[Term]
id: GO:0097159
is_a: GO:0005488

[Term]
id: GO:0098657
is_a: GO:0006810

[Term]
id: GO:0098772
is_a: GO:0003674

[Term]
id: GO:0140272
is_a: GO:0005488

[Term]
id: GO:1900120
is_a: GO:0043393

[Term]
id: GO:1900121
is_a: GO:0032091
is_a: GO:1900120

[Term]
id: GO:1900122
is_a: GO:0032092
is_a: GO:1900120

[Term]
id: GO:1900180
is_a: GO:1903827

[Term]
id: GO:1900181
is_a: GO:1900180
is_a: GO:1903828

[Term]
id: GO:1900182
is_a: GO:1900180
is_a: GO:1903829

[Term]
id: GO:1901363
is_a: GO:0005488

[Term]
id: GO:1903335
is_a: GO:0051049

[Term]
id: GO:1903336
is_a: GO:0051051
is_a: GO:1903335

[Term]
id: GO:1903337
is_a: GO:0051050
is_a: GO:1903335

[Term]
id: GO:1903827
is_a: GO:0032880
is_a: GO:0060341

[Term]
id: GO:1903828
is_a: GO:0048519
is_a: GO:1903827

[Term]
id: GO:1903829
is_a: GO:0048518
is_a: GO:1903827

[Term]
id: GO:1904950
is_a: GO:0048519
is_a: GO:0070201

[Term]
id: GO:1904951
is_a: GO:0048518
is_a: GO:0070201

[Term]
id: GO:1905153
is_a: GO:0051128

[Term]
id: GO:1905154
is_a: GO:0051129
is_a: GO:1905153

[Term]
id: GO:1905155
is_a: GO:0051130
is_a: GO:1905153

[Term]
id: GO:1905214
is_a: GO:0051098

[Term]
id: GO:1905215
is_a: GO:0051100
is_a: GO:1905214

[Term]
id: GO:1905216
is_a: GO:0051099
is_a: GO:1905214

[Term]
id: GO:2000272
is_a: GO:0010469
is_a: GO:0044092

[Term]
id: GO:2000273
is_a: GO:0010469
is_a: GO:0044093

[Term]
id: IAO:0000027
is_a: IAO:0000030

[Term]
id: IAO:0000030
is_a: BFO:0000031

[Term]
id: IAO:0000078
is_a: IAO:0000102

[Term]
id: IAO:0000102
is_a: IAO:0000027

[Term]
id: IAO:0000225
is_a: IAO:0000102

[Term]
id: IAO:0000409
is_a: IAO:0000102

[Term]
id: IDO:0000450
is_a: BFO:0000016

[Term]
id: IDO:0000528
is_a: BFO:0000040

[Term]
id: IDO:0000626
is_a: GO:0008150

[Term]
id: OGMS:0000045
is_a: BFO:0000040

[Term]
id: PATO:0000001
is_a: BFO:0000020

[Term]
id: PATO:0000057
is_a: PATO:0002323

[Term]
id: PATO:0000068
is_a: PATO:0000001

[Term]
id: PATO:0000069
is_a: PATO:0000068

[Term]
id: PATO:0000085
is_a: PATO:0001995

[Term]
id: PATO:0000169
is_a: PATO:0001995

[Term]
id: PATO:0000297
is_a: PATO:0002052
is_a: PATO:0002324

[Term]
id: PATO:0000460
is_a: PATO:0000069

[Term]
id: PATO:0000461
is_a: PATO:0000069

[Term]
id: PATO:0000498
is_a: PATO:0001309
is_a: PATO:0002304

[Term]
id: PATO:0000499
is_a: PATO:0001309
is_a: PATO:0002302

[Term]
id: PATO:0000513
is_a: PATO:0000085

[Term]
id: PATO:0000516
is_a: PATO:0000085

[Term]
id: PATO:0000718
is_a: PATO:0000169

[Term]
id: PATO:0001043
is_a: PATO:0000085

[Term]
id: PATO:0001046
is_a: PATO:0001995

[Term]
id: PATO:0001178
is_a: PATO:0001046

[Term]
id: PATO:0001236
is_a: PATO:0000001

[Term]
id: PATO:0001241
is_a: PATO:0000001

[Term]
id: PATO:0001309
is_a: PATO:0002062

[Term]
id: PATO:0001549
is_a: PATO:0000516
is_a: PATO:0002305

[Term]
id: PATO:0001550
is_a: PATO:0000516
is_a: PATO:0002303

[Term]
id: PATO:0001558
is_a: PATO:0001564

[Term]
id: PATO:0001564
is_a: PATO:0001236

[Term]
id: PATO:0001650
is_a: PATO:0001178
is_a: PATO:0002305

[Term]
id: PATO:0001651
is_a: PATO:0001178
is_a: PATO:0002303

[Term]
id: PATO:0001995
is_a: PATO:0001241

[Term]
id: PATO:0002051
is_a: PATO:0000057
is_a: PATO:0002304

[Term]
id: PATO:0002052
is_a: PATO:0000057
is_a: PATO:0002302

[Term]
id: PATO:0002062
is_a: PATO:0001236

[Term]
id: PATO:0002146
is_a: PATO:0001995

[Term]
id: PATO:0002147
is_a: PATO:0002146
is_a: PATO:0002303

[Term]
id: PATO:0002148
is_a: PATO:0002146
is_a: PATO:0002305

[Term]
id: PATO:0002300
is_a: PATO:0000069

[Term]
id: PATO:0002301
is_a: PATO:0000069

[Term]
id: PATO:0002302
is_a: PATO:0001236
is_a: PATO:0002301

[Term]
id: PATO:0002303
is_a: PATO:0001241
is_a: PATO:0002301

[Term]
id: PATO:0002304
is_a: PATO:0001236
is_a: PATO:0002300

[Term]
id: PATO:0002305
is_a: PATO:0001241
is_a: PATO:0002300

[Term]
id: PATO:0002323
is_a: PATO:0002062

[Term]
id: PATO:0002324
is_a: PATO:0002323

[Term]
id: PATO:0040003
is_a: PATO:0001995

[Term]
id: PATO:0045001
is_a: PATO:0001241

[Term]
id: PATO:0045047
is_a: PATO:0001178
is_a: PATO:0045001

[Term]
id: PATO:0045049
is_a: PATO:0000516
is_a: PATO:0045001

[Term]
id: PATO:0045073
is_a: PATO:0001236

[Term]
id: PATO:0045080
is_a: PATO:0002146
is_a: PATO:0045001

[Term]
id: PATO:0045084
is_a: PATO:0001309
is_a: PATO:0045073

[Term]
id: PATO:0045086
is_a: PATO:0000057
is_a: PATO:0045073

[Term]
id: PHIPO:0000001
name: pathogen host interaction phenotype
namespace: pathogen_host_interaction_phenotype
def: "Any of the set of observable disease formation characteristics arising from the interaction of a potentially pathogenic organism with a host organism." []
comment: No logical definition.\n\nThis is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-02T11:20:17Z xsd:string

[Term]
id: PHIPO:0000002
name: pathogen phenotype
namespace: pathogen_phenotype
def: "Any of the set of observable characteristics of a pathogen organism resulting from the interaction of its genotype with the environment (including any other organisms)." []
comment: No logical definition\n\nThis is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.\n\nnext to think about terms for reproduction sexual/asexual structures, growth
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-02T11:20:59Z xsd:string

[Term]
id: PHIPO:0000003
name: host phenotype
namespace: host_phenotype
comment: No logical definition.\n\nThis is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.\n\nHost phenotype covers...\nhost allele only phenotye\nhost chemistry only?\nwhat about host defense response to pathogen? is this covered under disease formation?\nwhat else...?\nresponse to wounding?
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-02T11:21:13Z xsd:string
property_value: http://purl.obolibrary.org/obo/def "Any of the set of observable characteristics of a host organism resulting from the interaction of its genotype with the environment (including any other organisms)." xsd:string

[Term]
id: PHIPO:0000004
name: normal pathogenicity
namespace: pathogen_host_interaction_phenotype
def: "A phenotype where the pathogenicity is normal (i.e the same as wild-type)" []
comment: Logical definition\nAC_pathogenicity and (has-relative-magnitude some normal (PATO:0000461))
synonym: "unaltered pathogenicity (exact); unaffected pathogenicity (exact); unchanged pathogenicity (exact)" EXACT []
is_a: PHIPO:0000006 ! pathogenicity phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T12:38:43Z xsd:string

[Term]
id: PHIPO:0000005
name: abnormal pathogenicity
namespace: pathogen_host_interaction_phenotype
def: "A phenotype where the pathogenicity is abnormal (i.e different than wild-type)" []
comment: Logical definition\nAC_pathogenicity and (has-relative-magnitude some abnormal (PATO:0000460))
is_a: PHIPO:0000006 ! pathogenicity phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T12:39:00Z xsd:string

[Term]
id: PHIPO:0000006
name: pathogenicity phenotype
namespace: pathogen_host_interaction_phenotype
def: "A phenotype that is relevant to pathogenicity. Pathogenicity is the ability of an organism, a pathogen, to produce an infectious disease in another organism" []
comment: Logical definition\nAC_pathogenicity and (inheres_in some AC_organism)\nPathogenicity is a qualitative concept
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
synonym: "pathogenesis (related)" RELATED []
is_a: PHIPO:0000001 ! pathogen host interaction phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T12:39:55Z xsd:string

[Term]
id: PHIPO:0000007
name: normal pathogenic phenotype
namespace: pathogen_host_interaction_phenotype
def: "A phenotype where the pathogenicity is normal (i.e. the same as wild-type), and the wild-type exhibits pathogenicity" []
comment: Logical definition\nAC_pathogenic and AC_pathogenicity and (has_relative_magnitude some normal (PATO:0000461))
is_a: PHIPO:0000004 ! normal pathogenicity
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T12:42:00Z xsd:string

[Term]
id: PHIPO:0000008
name: normal non pathogenic phenotype
namespace: pathogen_host_interaction_phenotype
def: "A phenotype where the pathogenicity is normal (i.e. the same as wild-type) , and the wild-type exhibits no pathogenicity" []
comment: Logical definition\nAC_non_pathogenic and AC_pathogenicity and (has_relative_magnitude some normal)
is_a: PHIPO:0000004 ! normal pathogenicity
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T12:42:16Z xsd:string

[Term]
id: PHIPO:0000009
name: gain of pathogenicity
namespace: pathogen_host_interaction_phenotype
def: "A phenotype where pathogenicity is observed in a mutant that is absent in the wild-type strain." []
comment: Logical definition\nAC_gain_of and AC_pathogenicity
synonym: "abnormal pathogenic phenotype" EXACT []
is_a: PHIPO:0000005 ! abnormal pathogenicity
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T12:45:12Z xsd:string
property_value: hasExactSynonym "abnormal pathogenic phenotype" xsd:string

[Term]
id: PHIPO:0000010
name: loss of pathogenicity
namespace: pathogen_host_interaction_phenotype
def: "A phenotype where pathogenicity observed in the wild-type strain is abolished." []
comment: Logical definition\nAC_pathogenicity and (qualifier some arrested (PATO:0000297))
synonym: "abnormal non pathogenic phenotype (exact); abolished pathogenicity (exact)" EXACT []
is_a: PHIPO:0000005 ! abnormal pathogenicity
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T12:45:31Z xsd:string

[Term]
id: PHIPO:0000011
name: virulence phenotype
namespace: pathogen_host_interaction_phenotype
def: "A phenotype that is relevant to virulence. Virulence is the severity to which a pathogen (species or strain) is able to cause infectious disease in another organism." []
comment: logical definition\nvirulence (PATO:0002146) and (inheres_in some AC_organism)\nVirulence is a quantitative concept
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
is_a: PHIPO:0000001 ! pathogen host interaction phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:02:03Z xsd:string

[Term]
id: PHIPO:0000012
name: normal virulence
namespace: pathogen_host_interaction_phenotype
def: "A phenotype where virulence is normal (i.e. the same as wild-type)." []
comment: Logical definition\nvirulence (PATO:0002146) and (has_relative_magnitude some normal (PATO:0000461))
synonym: "unaffected virulence (exact)" EXACT []
is_a: PHIPO:0000011 ! virulence phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:02:23Z xsd:string

[Term]
id: PHIPO:0000013
name: abnormal virulence
namespace: pathogen_host_interaction_phenotype
def: "A phenotype where virulence is abnormal (i.e. different than wild-type)." []
comment: Logical definition\nvirulence (PATO:0002146) and (has_relative_magnitude some abnormal (PATO:0000460)
is_a: PHIPO:0000011 ! virulence phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:02:39Z xsd:string

[Term]
id: PHIPO:0000014
name: increased virulence
namespace: pathogen_host_interaction_phenotype
def: "A phenotype where virulence is increased (compared to normal)." []
comment: Logical definition\nvirulence (PATO:0002146) and (increased_in_magnitude_relative_to some normal (PATO:0000461))\nOR\nincreased virulence PATO:0002148
synonym: "hypervirulence" EXACT []
is_a: PHIPO:0000013 ! abnormal virulence
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:07:31Z xsd:string

[Term]
id: PHIPO:0000015
name: reduced virulence
namespace: pathogen_host_interaction_phenotype
def: "A phenotype where virulence is decreased (i.e. fewer symptoms than normal)" []
comment: Logical definition\nvirulence (PATO:0002146) and (decreased_in_magnitude_relative_to some normal (PATO:0000461))\nOR\nreduced virulence PATO:0002147
synonym: "decreased virulence" EXACT []
is_a: PHIPO:0000013 ! abnormal virulence
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:08:10Z xsd:string
property_value: hasExactSynonym "decreased virulence" xsd:string

[Term]
id: PHIPO:0000016
name: normal pathogen phenotype
namespace: pathogen_phenotype
def: "A pathogen phenotype which is normal (i.e. the same as wild-type)." []
comment: Logical definition\nAC_pathogen phenotype and (has_relative_magnitude some normal (PATO:0000461))
is_a: PHIPO:0000002 ! pathogen phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:10:48Z xsd:string

[Term]
id: PHIPO:0000017
name: abnormal pathogen phenotype
namespace: pathogen_phenotype
def: "A pathogen phenotype which is abnormal (i.e. different than wild-type)." []
comment: Logical definition\nAC_pathogen phenotype and (has_relative_magnitude some abnormal (PATO:0000460))
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
is_a: PHIPO:0000002 ! pathogen phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:11:04Z xsd:string

[Term]
id: PHIPO:0000018
name: normal sensitivity to chemical
namespace: pathogen_phenotype
def: "A pathogen phenotype which displays a normal sensitivity to a chemical (eg the same as wild type)." []
comment: Logical definition\nAC_chemical and (sensitivity toward (PATO:0000085) some normal (PATO:0000461))\n\nwas 'sensitive to chemical' in PHI-base, ie normal sensitive response, same as wild-type
is_a: PATO:0045049
is_a: PHIPO:0000036 ! normal chemical target phenotype
intersection_of: PATO:0045049
intersection_of: RO:0000052 IDO:0000528
intersection_of: towards CHEBI:24431
relationship: RO:0000052 IDO:0000528
relationship: towards CHEBI:24431
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:12:20Z xsd:string

[Term]
id: PHIPO:0000019
name: lethal pathogen phenotype
namespace: pathogen_phenotype
def: "A lethal pathogen phenotype resulting from altering a gene product that is essential for the life of the organism." []
comment: Logical definition\nLethal (PATO:0000718) and (inheres_in some AC_organism)\n\nWill we also need lethal phenotype for Host phenotypes?
is_a: PHIPO:0000002 ! pathogen phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:12:47Z xsd:string

[Term]
id: PHIPO:0000020
name: abnormal chemical target phenotype
namespace: pathogen_phenotype
def: "A pathogen phenotype which displays an abnormal response to a chemical (eg different than wild type)." []
comment: No logical definition\n\nWill we also need Chemistry phenotypes for Host phenotypes?
is_a: PHIPO:0000159 ! pathogen chemical target phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:13:42Z xsd:string

[Term]
id: PHIPO:0000021
name: increased sensitivity to chemical
namespace: pathogen_phenotype
def: "A pathogen phenotype which displays an increased sensitivity to a chemical (eg different than wild type)." []
comment: Logical definition\nAC_chemical and (sensitivity to (PATO:0001046) some AC_increased)\n\nDo we also need 'decreased sensitivity to chemical'? No as this would be the same as 'increased resistance to chemical' (MU agrees)
is_a: PATO:0001549
is_a: PHIPO:0000020 ! abnormal chemical target phenotype
intersection_of: PATO:0001549
intersection_of: RO:0000052 IDO:0000528
intersection_of: towards CHEBI:24431
relationship: RO:0000052 IDO:0000528
relationship: towards CHEBI:24431
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:15:05Z xsd:string

[Term]
id: PHIPO:0000022
name: increased resistance to chemical
namespace: pathogen_phenotype
def: "A pathogen phenotype which displays an increased resistance to a chemical (eg different than wild type)." []
comment: Logical definition\nAC_chemical and (resistance to (PATO:0001046) some AC_increased)\n\nDo we also need 'decreased resistance to chemical'? No as this would be the same as 'increased sensitivity to chemical' (MU agrees)
is_a: PATO:0001650
is_a: PHIPO:0000020 ! abnormal chemical target phenotype
intersection_of: PATO:0001650
intersection_of: RO:0000052 IDO:0000528
intersection_of: towards CHEBI:24431
relationship: RO:0000052 IDO:0000528
relationship: towards CHEBI:24431
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:16:06Z xsd:string

[Term]
id: PHIPO:0000023
name: abnormal penetration assay phenotype
namespace: pathogen_phenotype
def: "A pathogen penetration assay phenotype (assessing the organism's ability to penetrate a given substance/membrane) which is abnormal (i.e. different than wild-type)." []
is_a: PHIPO:0000160 ! pathogen penetration assay phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:16:54Z xsd:string

[Term]
id: PHIPO:0000024
name: normal penetration assay phenotype
namespace: pathogen_phenotype
def: "A pathogen penetration assay phenotype (assessing the organism's ability to penetrate a given substance/membrane) which is normal (i.e. the same as wild-type)." []
is_a: PHIPO:0000160 ! pathogen penetration assay phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:17:08Z xsd:string

[Term]
id: PHIPO:0000025
name: normal mating phenotype prior to penetration
namespace: pathogen_phenotype
comment: Is this a bit too specific?\nshould this be with sexual reproduction?\neg ustilago and rust fungus\nMU agrees REMOVE from penetration
is_a: PHIPO:0000044 ! normal reproduction phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:17:46Z xsd:string

[Term]
id: PHIPO:0000026
name: normal penetration
namespace: pathogen_phenotype
def: "A pathogen phenotype indicating that the pathogen is able to penetrate a given experimental substance/membrane in the same manner as the wild-type." []
synonym: "no penetration defect" EXACT []
is_a: PHIPO:0000024 ! normal penetration assay phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:18:03Z xsd:string

[Term]
id: PHIPO:0000027
name: normal post penetration
namespace: pathogen_phenotype
def: "A pathogen phenotype indicating that the pathogen does not have a post-penetration defect when assessed for penetration ability on a given experimental substance/membrane and is able to continue growth after penetration in the same manner as the wild-type.\n\nWith MU: The pathogen does not have a post-penetration defect (pathogen growth or establishment of the host interfacial complex after penetration is the same as wild type)." []
is_a: PHIPO:0000024 ! normal penetration assay phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:19:13Z xsd:string

[Term]
id: PHIPO:0000028
name: normal pre penetration
namespace: pathogen_phenotype
def: "A pathogen phenotype indicating that the pathogen does not have a pre-penetration defect when assessed for penetration ability on a given experimental substance/membrane in the same manner as the wild-type.\n\nWith MU: The pathogen does not have a pre-penetration defect (development of a penetration structure is the same as wild type)." []
is_a: PHIPO:0000024 ! normal penetration assay phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:19:44Z xsd:string

[Term]
id: PHIPO:0000029
name: abnormal mating phenotype prior to penetration
namespace: pathogen_phenotype
comment: Is this a bit too specific?\nshould this be with reproduction?
is_a: PHIPO:0000043 ! abnormal reproduction phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:22:14Z xsd:string

[Term]
id: PHIPO:0000030
name: abnormal penetration
namespace: pathogen_phenotype
def: "A pathogen phenotype indicating that the pathogen is not able to penetrate a given experimental substance/membrane in the same manner as the wild-type." []
synonym: "penetration defect" EXACT []
is_a: PHIPO:0000023 ! abnormal penetration assay phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:22:31Z xsd:string

[Term]
id: PHIPO:0000031
name: abnormal post penetration
namespace: pathogen_phenotype
def: "A pathogen phenotype indicating that the pathogen does have a post-penetration defect when assessed for penetration ability on a given experimental substance/membrane and is unable to continue growth after penetration in the same manner as the wild-type.\n\nWith MU: The pathogen does have a post-penetration defect (pathogen growth or establishment of the host interfacial complex after penetration is not the same as wild type).\n\n(eg species neutral example BIC Magnaporthe/ Hpa haustoria)" []
is_a: PHIPO:0000023 ! abnormal penetration assay phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:22:52Z xsd:string

[Term]
id: PHIPO:0000032
name: abnormal pre penetration
namespace: pathogen_phenotype
def: "A pathogen phenotype indicating that the pathogen does have a pre-penetration defect when assessed for penetration ability on a given experimental substance/membrane in the same manner as the wild-type.\n\n\nWith MU: The pathogen does have a pre-penetration defect (development of a penetration structure is the same as wild type)" []
is_a: PHIPO:0000023 ! abnormal penetration assay phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-05-04T13:23:06Z xsd:string

[Term]
id: PHIPO:0000033
name: normal host phenotype
namespace: host_phenotype
def: "A host phenotype which is normal (i.e. the same as wild-type)." []
comment: Logical definition\nAC_host phenotype and (has_relative_magnitude some normal (PATO:0000461))
is_a: PHIPO:0000003 ! host phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-07-04T13:41:02Z xsd:string

[Term]
id: PHIPO:0000034
name: abnormal host phenotype
namespace: host_phenotype
def: "A host phenotype which is abnormal (i.e. different than wild-type)." []
comment: Logical definition\nAC_host phenotype and (has_relative_magnitude some abnormal (PATO:0000460))
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
is_a: PHIPO:0000003 ! host phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-07-04T13:41:14Z xsd:string

[Term]
id: PHIPO:0000035
name: normal resistance to chemical
namespace: pathogen_phenotype
def: "A pathogen phenotype which displays a normal resistance to a chemical (eg the same as wild type)." []
comment: Logical definition\nAC_chemical and (resistance to (PATO:0001046) some normal (PATO:0000461))\n\nNEW to PHI-base, ie normal resistance response, same as wild-type. Similar terms to 'normal pathogenic' and 'normal non pathogenic' phenotypes
is_a: PATO:0045047
is_a: PHIPO:0000036 ! normal chemical target phenotype
intersection_of: PATO:0045047
intersection_of: RO:0000052 IDO:0000528
intersection_of: towards CHEBI:24431
relationship: RO:0000052 IDO:0000528
relationship: towards CHEBI:24431
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-07-09T13:41:47Z xsd:string

[Term]
id: PHIPO:0000036
name: normal chemical target phenotype
namespace: pathogen_phenotype
def: "A pathogen phenotype which displays a normal response to a chemical (eg the same as wild type)." []
comment: No logical definition\n\nWill we also need Chemistry phenotypes for Host phenotypes?
is_a: PHIPO:0000159 ! pathogen chemical target phenotype
property_value: created:by "alaynecuzick" xsd:string
property_value: creation:date 2018-07-09T13:43:00Z xsd:string

[Term]
id: PHIPO:0000037
name: lethal host phenotype
namespace: host_phenotype
def: "A lethal host phenotype resulting from altering a gene product that is essential for the life of the organism." []
comment: Logical definition\nLethal (PATO:0000718) and (inheres_in some AC_organism)\n\nThis is the same as for 'lethal pathogen phenotype' is that ok?
is_a: PHIPO:0000003 ! host phenotype
created_by: alaynecuzick
creation_date: 2018-07-10T11:46:51Z

[Term]
id: PHIPO:0000038
name: mutualism phenotype
namespace: pathogen_host_interaction_phenotype
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
is_a: PHIPO:0000001 ! pathogen host interaction phenotype
created_by: alaynecuzick
creation_date: 2018-07-10T11:52:04Z

[Term]
id: PHIPO:0000039
name: normal mutualism
namespace: pathogen_host_interaction_phenotype
def: "A phenotype in which the interaction is the same as the wild-type, no asymptomatic colonisation or disease formation symtoms are visible." []
comment: Logical definition\nmutualism (GO:0085030) and (has_relative_magnitude some normal (PATO:0000461))
is_a: PHIPO:0000038 ! mutualism phenotype
created_by: alaynecuzick
creation_date: 2018-07-10T11:52:33Z

[Term]
id: PHIPO:0000040
name: abnormal mutualism shift towards disease formation
namespace: pathogen_host_interaction_phenotype
def: "A phenotype in which the balance of symbiotic mutualism has been disrupted compared to the normal interaction and the endosymbiont organism is able to show greater biomass within the host and/or the formation of visible disease formation symptoms compared to the normal interaction." []
comment: Logical definition\nmutualism (GO:0085030) and (has_relative_magnitude some abnormal (PATO:0000460))\n\nneed to choose correct language for term name
is_a: PHIPO:0000038 ! mutualism phenotype
created_by: alaynecuzick
creation_date: 2018-07-10T11:53:05Z

[Term]
id: PHIPO:0000041
name: normal motility phenotype
namespace: pathogen_phenotype
comment: bacteria flagella\naphid flight\nnematode wiggle\nfungi non-motile (apart from spores)
is_a: PHIPO:0000157 ! pathogen motility phenotype
created_by: alaynecuzick
creation_date: 2018-07-13T11:54:28Z

[Term]
id: PHIPO:0000042
name: abnormal motility phenotype
namespace: pathogen_phenotype
is_a: PHIPO:0000157 ! pathogen motility phenotype
created_by: alaynecuzick
creation_date: 2018-07-13T11:54:54Z

[Term]
id: PHIPO:0000043
name: abnormal reproduction phenotype
namespace: pathogen_phenotype
is_a: PHIPO:0000161 ! pathogen reproductive phenotype
created_by: alaynecuzick
creation_date: 2018-07-13T11:57:47Z

[Term]
id: PHIPO:0000044
name: normal reproduction phenotype
namespace: pathogen_phenotype
comment: note: will need to add other types of reproduction, not just sporogenesis
is_a: PHIPO:0000161 ! pathogen reproductive phenotype
created_by: alaynecuzick
creation_date: 2018-07-13T11:58:15Z

[Term]
id: PHIPO:0000045
name: normal asexual reproduction
namespace: pathogen_phenotype
comment: note: endospores are dormant, tough non-reproductive structures -wikipedia
is_a: PHIPO:0000044 ! normal reproduction phenotype
created_by: alaynecuzick
creation_date: 2018-07-13T12:08:15Z

[Term]
id: PHIPO:0000046
name: normal sexual reproduction
namespace: pathogen_phenotype
is_a: PHIPO:0000044 ! normal reproduction phenotype
created_by: alaynecuzick
creation_date: 2018-07-13T12:09:04Z

[Term]
id: PHIPO:0000047
name: abnormal asexual reproduction
namespace: pathogen_phenotype
is_a: PHIPO:0000043 ! abnormal reproduction phenotype
created_by: alaynecuzick
creation_date: 2018-07-13T12:09:49Z

[Term]
id: PHIPO:0000048
name: abnormal sexual reproduction
namespace: pathogen_phenotype
is_a: PHIPO:0000043 ! abnormal reproduction phenotype
created_by: alaynecuzick
creation_date: 2018-07-13T12:10:14Z

[Term]
id: PHIPO:0000049
name: increased quantity of sexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000073 ! abnormal quantity of sexual spores
created_by: alaynecuzick
creation_date: 2018-07-13T12:16:49Z

[Term]
id: PHIPO:0000050
name: decreased quantity of sexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000073 ! abnormal quantity of sexual spores
created_by: alaynecuzick
creation_date: 2018-07-13T12:17:15Z

[Term]
id: PHIPO:0000051
name: increased quantity of asexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000082 ! abnormal quantity of asexual spores
created_by: alaynecuzick
creation_date: 2018-07-13T12:18:08Z

[Term]
id: PHIPO:0000052
name: decreased quantity of asexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000082 ! abnormal quantity of asexual spores
created_by: alaynecuzick
creation_date: 2018-07-13T12:18:34Z

[Term]
id: PHIPO:0000053
name: delayed production of asexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000066 ! abnormal timing of asexual spore production
created_by: alaynecuzick
creation_date: 2018-07-13T12:20:33Z

[Term]
id: PHIPO:0000054
name: expedited production of asexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000066 ! abnormal timing of asexual spore production
created_by: alaynecuzick
creation_date: 2018-07-13T12:22:31Z

[Term]
id: PHIPO:0000055
name: delayed production of sexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000074 ! abnormal timing of sexual spore production
created_by: alaynecuzick
creation_date: 2018-07-13T12:23:43Z

[Term]
id: PHIPO:0000056
name: expedited production of sexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000074 ! abnormal timing of sexual spore production
created_by: alaynecuzick
creation_date: 2018-07-13T12:24:07Z

[Term]
id: PHIPO:0000057
name: normal quantity of sexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000079 ! normal sexual sporogenesis
created_by: alaynecuzick
creation_date: 2018-07-13T12:25:33Z

[Term]
id: PHIPO:0000058
name: normal speed in production of sexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000079 ! normal sexual sporogenesis
created_by: alaynecuzick
creation_date: 2018-07-13T12:26:14Z

[Term]
id: PHIPO:0000059
name: normal quantity of asexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000080 ! normal asexual sporogenesis
created_by: alaynecuzick
creation_date: 2018-07-13T12:27:14Z

[Term]
id: PHIPO:0000060
name: normal speed in production of asexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000080 ! normal asexual sporogenesis
created_by: alaynecuzick
creation_date: 2018-07-13T12:27:45Z

[Term]
id: PHIPO:0000061
name: asexual spores absent
namespace: pathogen_phenotype
is_a: PHIPO:0000078 ! abnormal asexual sporogenesis
created_by: alaynecuzick
creation_date: 2018-07-13T12:28:57Z

[Term]
id: PHIPO:0000062
name: sexual spores absent
namespace: pathogen_phenotype
is_a: PHIPO:0000130 ! abnormal sexual spore morphology
created_by: alaynecuzick
creation_date: 2018-07-13T12:29:31Z

[Term]
id: PHIPO:0000063
name: sexual spores present
namespace: pathogen_phenotype
is_a: PHIPO:0000079 ! normal sexual sporogenesis
created_by: alaynecuzick
creation_date: 2018-07-13T12:29:58Z

[Term]
id: PHIPO:0000064
name: asexual spores present
namespace: pathogen_phenotype
is_a: PHIPO:0000080 ! normal asexual sporogenesis
created_by: alaynecuzick
creation_date: 2018-07-13T12:30:18Z

[Term]
id: PHIPO:0000065
name: asexual spores increased in size
namespace: pathogen_phenotype
is_a: PHIPO:0000081 ! abnormal asexual spore size
created_by: alaynecuzick
creation_date: 2018-07-13T12:32:36Z

[Term]
id: PHIPO:0000066
name: abnormal timing of asexual spore production
namespace: pathogen_phenotype
is_a: PHIPO:0000078 ! abnormal asexual sporogenesis
created_by: alaynecuzick
creation_date: 2018-07-13T12:33:03Z

[Term]
id: PHIPO:0000067
name: asexual spores decreased in size
namespace: pathogen_phenotype
is_a: PHIPO:0000081 ! abnormal asexual spore size
created_by: alaynecuzick
creation_date: 2018-07-13T12:36:00Z

[Term]
id: PHIPO:0000068
name: sexual spores increased in size
namespace: pathogen_phenotype
is_a: PHIPO:0000071 ! abnormal sexual spore size
created_by: alaynecuzick
creation_date: 2018-07-13T12:37:29Z

[Term]
id: PHIPO:0000069
name: sexual spores decreased in size
namespace: pathogen_phenotype
is_a: PHIPO:0000071 ! abnormal sexual spore size
created_by: alaynecuzick
creation_date: 2018-07-13T12:37:52Z

[Term]
id: PHIPO:0000070
name: sexual spores altered in pigmentation
namespace: pathogen_phenotype
is_a: PHIPO:0000130 ! abnormal sexual spore morphology
created_by: alaynecuzick
creation_date: 2018-07-13T12:38:19Z

[Term]
id: PHIPO:0000071
name: abnormal sexual spore size
namespace: pathogen_phenotype
is_a: PHIPO:0000130 ! abnormal sexual spore morphology
created_by: alaynecuzick
creation_date: 2018-07-13T12:39:04Z

[Term]
id: PHIPO:0000072
name: abnormal sexual spore shape
namespace: pathogen_phenotype
is_a: PHIPO:0000130 ! abnormal sexual spore morphology
created_by: alaynecuzick
creation_date: 2018-07-13T12:39:34Z

[Term]
id: PHIPO:0000073
name: abnormal quantity of sexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000077 ! abnormal sexual sporogenesis
created_by: alaynecuzick
creation_date: 2018-07-13T12:40:05Z

[Term]
id: PHIPO:0000074
name: abnormal timing of sexual spore production
namespace: pathogen_phenotype
is_a: PHIPO:0000077 ! abnormal sexual sporogenesis
created_by: alaynecuzick
creation_date: 2018-07-13T12:42:05Z

[Term]
id: PHIPO:0000075
name: abnormal asexual spore shape
namespace: pathogen_phenotype
is_a: PHIPO:0000127 ! abnormal asexual spore morphology
created_by: alaynecuzick
creation_date: 2018-07-13T12:43:06Z

[Term]
id: PHIPO:0000076
name: asexual spores altered in pigmentation
namespace: pathogen_phenotype
is_a: PHIPO:0000127 ! abnormal asexual spore morphology
created_by: alaynecuzick
creation_date: 2018-07-13T12:43:42Z

[Term]
id: PHIPO:0000077
name: abnormal sexual sporogenesis
namespace: pathogen_phenotype
is_a: PHIPO:0000048 ! abnormal sexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T12:54:33Z

[Term]
id: PHIPO:0000078
name: abnormal asexual sporogenesis
namespace: pathogen_phenotype
is_a: PHIPO:0000047 ! abnormal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T12:55:38Z

[Term]
id: PHIPO:0000079
name: normal sexual sporogenesis
namespace: pathogen_phenotype
is_a: PHIPO:0000046 ! normal sexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T12:56:11Z

[Term]
id: PHIPO:0000080
name: normal asexual sporogenesis
namespace: pathogen_phenotype
is_a: PHIPO:0000045 ! normal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T12:57:46Z

[Term]
id: PHIPO:0000081
name: abnormal asexual spore size
namespace: pathogen_phenotype
is_a: PHIPO:0000127 ! abnormal asexual spore morphology
created_by: alaynecuzick
creation_date: 2018-07-13T13:08:40Z

[Term]
id: PHIPO:0000082
name: abnormal quantity of asexual spores
namespace: pathogen_phenotype
is_a: PHIPO:0000078 ! abnormal asexual sporogenesis
created_by: alaynecuzick
creation_date: 2018-07-13T13:09:40Z

[Term]
id: PHIPO:0000083
name: abnormal asexual spore motility
namespace: pathogen_phenotype
comment: zoospores motile asxual spore using flagellum for locomotion-wikipedia. \nAre there any motile sexual spores?
is_a: PHIPO:0000047 ! abnormal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:17:24Z

[Term]
id: PHIPO:0000084
name: increased asexual spore motility
namespace: pathogen_phenotype
is_a: PHIPO:0000083 ! abnormal asexual spore motility
created_by: alaynecuzick
creation_date: 2018-07-13T13:18:20Z

[Term]
id: PHIPO:0000085
name: decreased asexual spore motility
namespace: pathogen_phenotype
is_a: PHIPO:0000083 ! abnormal asexual spore motility
created_by: alaynecuzick
creation_date: 2018-07-13T13:18:38Z

[Term]
id: PHIPO:0000086
name: normal asexual spore motility
namespace: pathogen_phenotype
is_a: PHIPO:0000045 ! normal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:21:21Z

[Term]
id: PHIPO:0000087
name: normal binary fission
namespace: pathogen_phenotype
is_a: PHIPO:0000045 ! normal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:25:48Z

[Term]
id: PHIPO:0000088
name: normal budding
namespace: pathogen_phenotype
is_a: PHIPO:0000045 ! normal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:27:00Z

[Term]
id: PHIPO:0000089
name: normal fragmentation
namespace: pathogen_phenotype
is_a: PHIPO:0000045 ! normal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:27:51Z

[Term]
id: PHIPO:0000090
name: normal parthenogenesis
namespace: pathogen_phenotype
is_a: PHIPO:0000045 ! normal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:28:15Z

[Term]
id: PHIPO:0000091
name: abnormal budding
namespace: pathogen_phenotype
is_a: PHIPO:0000047 ! abnormal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:30:12Z

[Term]
id: PHIPO:0000092
name: abnormal binary fission
namespace: pathogen_phenotype
is_a: PHIPO:0000047 ! abnormal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:30:30Z

[Term]
id: PHIPO:0000093
name: abnormal parthenogenesis
namespace: pathogen_phenotype
is_a: PHIPO:0000047 ! abnormal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:31:01Z

[Term]
id: PHIPO:0000094
name: normal mitosis in asexual reproduction
namespace: pathogen_phenotype
is_a: PHIPO:0000045 ! normal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:38:56Z

[Term]
id: PHIPO:0000095
name: abnormal mitosis in asexual reproduction
namespace: pathogen_phenotype
is_a: PHIPO:0000047 ! abnormal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:41:23Z

[Term]
id: PHIPO:0000096
name: abnormal mitosis in sexual reproduction
namespace: pathogen_phenotype
is_a: PHIPO:0000048 ! abnormal sexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:42:09Z

[Term]
id: PHIPO:0000097
name: abnormal meiosis in sexual reproduction
namespace: pathogen_phenotype
is_a: PHIPO:0000048 ! abnormal sexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:42:37Z

[Term]
id: PHIPO:0000098
name: normal mitosis in sexual reproduction
namespace: pathogen_phenotype
is_a: PHIPO:0000046 ! normal sexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:43:09Z

[Term]
id: PHIPO:0000099
name: normal meiosis in sexual reproduction
namespace: pathogen_phenotype
is_a: PHIPO:0000046 ! normal sexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-13T13:43:30Z

[Term]
id: PHIPO:0000100
name: increased pathogen motility
namespace: pathogen_phenotype
is_a: PHIPO:0000042 ! abnormal motility phenotype
created_by: alaynecuzick
creation_date: 2018-07-17T10:24:59Z

[Term]
id: PHIPO:0000101
name: decreased pathogen motility
namespace: pathogen_phenotype
is_a: PHIPO:0000042 ! abnormal motility phenotype
created_by: alaynecuzick
creation_date: 2018-07-17T10:25:07Z

[Term]
id: PHIPO:0000102
name: loss of pathogen motility
namespace: pathogen_phenotype
is_a: PHIPO:0000042 ! abnormal motility phenotype
created_by: alaynecuzick
creation_date: 2018-07-17T10:25:22Z

[Term]
id: PHIPO:0000103
name: gain of pathogen motility
namespace: pathogen_phenotype
is_a: PHIPO:0000042 ! abnormal motility phenotype
created_by: alaynecuzick
creation_date: 2018-07-17T10:25:33Z

[Term]
id: PHIPO:0000104
name: increased size of penetration structure
namespace: pathogen_phenotype
is_a: PHIPO:0000124 ! abnormal penetration structure present
created_by: alaynecuzick
creation_date: 2018-07-17T10:58:56Z

[Term]
id: PHIPO:0000105
name: decreased size of penetration structure
namespace: pathogen_phenotype
is_a: PHIPO:0000124 ! abnormal penetration structure present
created_by: alaynecuzick
creation_date: 2018-07-17T11:00:04Z

[Term]
id: PHIPO:0000106
name: increased quantity of penetration structure
namespace: pathogen_phenotype
is_a: PHIPO:0000124 ! abnormal penetration structure present
created_by: alaynecuzick
creation_date: 2018-07-17T11:00:54Z

[Term]
id: PHIPO:0000107
name: decreased quantity of penetration structure
namespace: pathogen_phenotype
is_a: PHIPO:0000124 ! abnormal penetration structure present
created_by: alaynecuzick
creation_date: 2018-07-17T11:05:16Z

[Term]
id: PHIPO:0000108
name: delayed timing of penetration structure development
namespace: pathogen_phenotype
is_a: PHIPO:0000124 ! abnormal penetration structure present
created_by: alaynecuzick
creation_date: 2018-07-17T11:13:16Z

[Term]
id: PHIPO:0000109
name: expedited timing of penetration structure development
namespace: pathogen_phenotype
is_a: PHIPO:0000124 ! abnormal penetration structure present
created_by: alaynecuzick
creation_date: 2018-07-17T11:13:53Z

[Term]
id: PHIPO:0000110
name: absent penetration structure
namespace: pathogen_phenotype
is_a: PHIPO:0000032 ! abnormal pre penetration
created_by: alaynecuzick
creation_date: 2018-07-17T11:16:18Z

[Term]
id: PHIPO:0000111
name: delayed pathogen penetration
namespace: pathogen_phenotype
is_a: PHIPO:0000113 ! altered functionality of penetration structure
created_by: alaynecuzick
creation_date: 2018-07-17T11:17:12Z

[Term]
id: PHIPO:0000112
name: non-functional penetration structure present
namespace: pathogen_phenotype
is_a: PHIPO:0000030 ! abnormal penetration
created_by: alaynecuzick
creation_date: 2018-07-17T11:19:23Z

[Term]
id: PHIPO:0000113
name: altered functionality of penetration structure
namespace: pathogen_phenotype
def: "Penetration structure formed but not functioning in the same manner as the wild type." []
is_a: PHIPO:0000030 ! abnormal penetration
created_by: alaynecuzick
creation_date: 2018-07-17T11:19:35Z

[Term]
id: PHIPO:0000114
name: increased pathogen penetration across the barrier
namespace: pathogen_phenotype
is_a: PHIPO:0000113 ! altered functionality of penetration structure
created_by: alaynecuzick
creation_date: 2018-07-17T11:22:58Z

[Term]
id: PHIPO:0000115
name: decreased pathogen penetration across the barrier
namespace: pathogen_phenotype
is_a: PHIPO:0000113 ! altered functionality of penetration structure
created_by: alaynecuzick
creation_date: 2018-07-17T11:23:12Z

[Term]
id: PHIPO:0000116
name: absent pathogen growth post penetration
namespace: pathogen_phenotype
is_a: PHIPO:0000031 ! abnormal post penetration
created_by: alaynecuzick
creation_date: 2018-07-17T11:30:36Z

[Term]
id: PHIPO:0000117
name: increased pathogen growth post penetration
namespace: pathogen_phenotype
is_a: PHIPO:0000125 ! abnormal pathogen growth post penetration present
created_by: alaynecuzick
creation_date: 2018-07-17T11:30:56Z

[Term]
id: PHIPO:0000118
name: decreased pathogen growth post penetration
namespace: pathogen_phenotype
is_a: PHIPO:0000125 ! abnormal pathogen growth post penetration present
created_by: alaynecuzick
creation_date: 2018-07-17T11:31:06Z

[Term]
id: PHIPO:0000119
name: delayed timing of pathogen growth post penetration
namespace: pathogen_phenotype
is_a: PHIPO:0000125 ! abnormal pathogen growth post penetration present
created_by: alaynecuzick
creation_date: 2018-07-17T11:31:15Z

[Term]
id: PHIPO:0000120
name: expedited timing of pathogen growth post penetration
namespace: pathogen_phenotype
is_a: PHIPO:0000125 ! abnormal pathogen growth post penetration present
created_by: alaynecuzick
creation_date: 2018-07-17T11:31:21Z

[Term]
id: PHIPO:0000121
name: abnormal asexual reproduction structure
namespace: pathogen_phenotype
comment: sporangiphores\nnematadoes egg to be fertilised\naphids, live young
is_a: PHIPO:0000043 ! abnormal reproduction phenotype
created_by: alaynecuzick
creation_date: 2018-07-17T11:44:01Z

[Term]
id: PHIPO:0000122
name: abnormal asexual resting spore
namespace: pathogen_phenotype
comment: eg bacterial endospore\nfungal chlamydospore\nnematode cysts\n\nincreased\ndecreased\ndelayed\nexpedited\nabsent
is_a: PHIPO:0000121 ! abnormal asexual reproduction structure
created_by: alaynecuzick
creation_date: 2018-07-17T11:46:50Z

[Term]
id: PHIPO:0000123
name: normal organism growth
namespace: pathogen_phenotype
comment: ideas for other terms with MU\n\ncolony formation\nmaturation in aphids/nematodes\ncell size\npigment (melanin aging)\nchange of shape of growth structure/ colony shape/ cell shape\ncell morphology\nasexual and sexual spore morphology\nspore germination\nembryo growth defect
is_a: PHIPO:0000162 ! pathogen organism growth phenotype
created_by: alaynecuzick
creation_date: 2018-07-17T11:49:54Z

[Term]
id: PHIPO:0000124
name: abnormal penetration structure present
namespace: pathogen_phenotype
is_a: PHIPO:0000032 ! abnormal pre penetration
created_by: alaynecuzick
creation_date: 2018-07-17T12:23:31Z

[Term]
id: PHIPO:0000125
name: abnormal pathogen growth post penetration present
namespace: pathogen_phenotype
is_a: PHIPO:0000031 ! abnormal post penetration
created_by: alaynecuzick
creation_date: 2018-07-17T12:28:43Z

[Term]
id: PHIPO:0000126
name: expedited pathogen penetration
namespace: pathogen_phenotype
is_a: PHIPO:0000113 ! altered functionality of penetration structure
created_by: alaynecuzick
creation_date: 2018-07-17T12:39:33Z

[Term]
id: PHIPO:0000127
name: abnormal asexual spore morphology
namespace: pathogen_phenotype
is_a: PHIPO:0000043 ! abnormal reproduction phenotype
created_by: alaynecuzick
creation_date: 2018-07-17T13:01:41Z

[Term]
id: PHIPO:0000128
name: normal asexual spore morphology
namespace: pathogen_phenotype
is_a: PHIPO:0000045 ! normal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-17T13:04:52Z

[Term]
id: PHIPO:0000129
name: normal asexual reproduction structure
namespace: pathogen_phenotype
is_a: PHIPO:0000045 ! normal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-17T13:06:10Z

[Term]
id: PHIPO:0000130
name: abnormal sexual spore morphology
namespace: pathogen_phenotype
is_a: PHIPO:0000048 ! abnormal sexual reproduction
created_by: alaynecuzick
creation_date: 2018-07-17T13:09:36Z

[Term]
id: PHIPO:0000131
name: pathogen host protein protein interaction phenotype
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype that protein affects the binding of one protein to another. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0000702
is_a: PHIPO:0000164 ! pathogen host interaction binding phenotype
created_by: alaynecuzick
creation_date: 2018-09-13T13:31:00Z

[Term]
id: PHIPO:0000132
name: pathogen protein protein interaction phenotype
namespace: pathogen_phenotype
def: "A pathogen phenotype that protein affects the binding of one protein to another. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0000702
is_a: PHIPO:0000158 ! pathogen binding phenotype
created_by: alaynecuzick
creation_date: 2018-09-13T13:31:27Z

[Term]
id: PHIPO:0000133
name: abnormal pathogen protein protein interaction
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which the binding of one protein to another is abnormal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0000704
is_a: PHIPO:0000132 ! pathogen protein protein interaction phenotype
created_by: alaynecuzick
creation_date: 2018-09-13T13:32:39Z

[Term]
id: PHIPO:0000134
name: normal pathogen protein protein interaction
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which the binding of one protein to another is normal (i.e. indistinguishable from wild type). The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0000703
is_a: PHIPO:0000132 ! pathogen protein protein interaction phenotype
created_by: alaynecuzick
creation_date: 2018-09-13T13:33:02Z

[Term]
id: PHIPO:0000135
name: abolished pathogen protein protein interaction
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which the binding of one protein to another does not occur. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0000705
is_a: PHIPO:0000133 ! abnormal pathogen protein protein interaction
created_by: alaynecuzick
creation_date: 2018-09-13T13:33:52Z

[Term]
id: PHIPO:0000136
name: decreased pathogen protein protein interaction
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which the binding of one protein to another occurs to a lower extent than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0001645
is_a: PHIPO:0000133 ! abnormal pathogen protein protein interaction
created_by: alaynecuzick
creation_date: 2018-09-13T13:34:13Z

[Term]
id: PHIPO:0000137
name: increased pathogen protein protein interaction
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which the binding of one protein to another occurs to a greater extent than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0001571
is_a: PHIPO:0000133 ! abnormal pathogen protein protein interaction
created_by: alaynecuzick
creation_date: 2018-09-13T13:34:28Z

[Term]
id: PHIPO:0000138
name: altered pathogen protein binding specificity
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which a mutation causes a gene product to bind to one or more proteins with different specificity from normal. For example, a protein may bind to a protein in a mutant that it does not bind in wild type. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0005119
is_a: PHIPO:0000133 ! abnormal pathogen protein protein interaction
created_by: alaynecuzick
creation_date: 2018-09-13T13:35:56Z

[Term]
id: PHIPO:0000139
name: abnormal pathogen protein complex binding
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which the binding of one protein to a protein complex is abnormal. The protein whose binding to the protein complex is affected may be encoded by the mutated gene, or may be encoded by a different gene." []
xref: FYPO:0003591
is_a: PHIPO:0000133 ! abnormal pathogen protein protein interaction
created_by: alaynecuzick
creation_date: 2018-09-13T13:36:40Z

[Term]
id: PHIPO:0000140
name: decreased duration of pathogen protein protein interaction
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which the binding of one protein to another occurs for a shorter time than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0005785
is_a: PHIPO:0000133 ! abnormal pathogen protein protein interaction
created_by: alaynecuzick
creation_date: 2018-09-13T13:37:50Z

[Term]
id: PHIPO:0000141
name: decreased extent and duration of pathogen protein protein interaction
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which the binding of one protein to another occurs to a lower extent, and for a shorter time, than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0005784
is_a: PHIPO:0000133 ! abnormal pathogen protein protein interaction
created_by: alaynecuzick
creation_date: 2018-09-13T13:38:26Z

[Term]
id: PHIPO:0000142
name: pathogen RNA binding phenotype
namespace: pathogen_phenotype
def: "A pathogen phenotype that affects RNA binding. The relevant gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0002131
is_a: PHIPO:0000158 ! pathogen binding phenotype
created_by: alaynecuzick
creation_date: 2018-09-13T13:44:08Z

[Term]
id: PHIPO:0000143
name: pathogen DNA binding phenotype
namespace: pathogen_phenotype
def: "A pathogen phenotype that affects DNA binding. The affected gene product may be encoded by the mutated gene, or by a different gene." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.\n\nLogical definition\nphenotype (this would need to be PHIPO pathogen phenotype/host phenotype or disease formation phenotype) and (inheres_in some DNA binding (GO:0003677)
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0000653
is_a: PHIPO:0000158 ! pathogen binding phenotype
created_by: alaynecuzick
creation_date: 2018-09-13T13:44:19Z

[Term]
id: PHIPO:0000144
name: normal pathogen protein complex binding
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which the binding of one protein to a protein complex is normal (i.e. indistinguishable from wild type). The protein whose binding to the protein complex is assayed may be encoded by the mutated gene, or may be encoded by a different gene." []
xref: FYPO:0005232
is_a: PHIPO:0000134 ! normal pathogen protein protein interaction
created_by: alaynecuzick
creation_date: 2018-09-24T13:14:19Z

[Term]
id: PHIPO:0000145
name: abnormal pathogen DNA binding
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which occurrence of DNA binding by a gene product is abnormal, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0000656
is_a: PHIPO:0000143 ! pathogen DNA binding phenotype
created_by: alaynecuzick
creation_date: 2018-09-25T13:33:07Z

[Term]
id: PHIPO:0000146
name: normal pathogen DNA binding
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which occurrence of DNA binding by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene." []
comment: Logical defintion\nquality (PATO:0000001) and (inheres_in some DNA binding (GO:0003677)) and (qualifier (??) some normal PATO:0000461)
xref: FYPO:0000655
is_a: PHIPO:0000143 ! pathogen DNA binding phenotype
created_by: alaynecuzick
creation_date: 2018-09-25T13:33:18Z

[Term]
id: PHIPO:0000147
name: abolished pathogen DNA binding
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which DNA binding by a gene product does not occur, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0000659
is_a: PHIPO:0000145 ! abnormal pathogen DNA binding
created_by: alaynecuzick
creation_date: 2018-09-25T13:34:30Z

[Term]
id: PHIPO:0000148
name: altered pathogen DNA binding specificity
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which a gene product that normally binds to a specific DNA sequence instead binds to a different sequence when a gene is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0003735
is_a: PHIPO:0000145 ! abnormal pathogen DNA binding
created_by: alaynecuzick
creation_date: 2018-09-25T13:34:56Z

[Term]
id: PHIPO:0000149
name: decreased pathogen DNA binding
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which occurrence of DNA binding by a gene product is decreased, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0000658
is_a: PHIPO:0000145 ! abnormal pathogen DNA binding
created_by: alaynecuzick
creation_date: 2018-09-25T13:35:16Z

[Term]
id: PHIPO:0000150
name: increased pathogen DNA binding
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which occurrence of DNA binding by a gene product is increased, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0000657
is_a: PHIPO:0000145 ! abnormal pathogen DNA binding
created_by: alaynecuzick
creation_date: 2018-09-25T13:35:28Z

[Term]
id: PHIPO:0000151
name: abnormal pathogen multiple protein binding to DNA
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which the binding of two or more proteins to DNA is abnormal. The proteins may bind simultaneously or sequentially, but both or all would normally be present together on DNA at some time. One affected gene product may be encoded by the mutated gene, or all may be encoded by different genes." []
xref: FYPO:0006555
is_a: PHIPO:0000145 ! abnormal pathogen DNA binding
created_by: alaynecuzick
creation_date: 2018-09-25T13:36:17Z

[Term]
id: PHIPO:0000152
name: abnormal pathogen RNA binding
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which occurrence of RNA binding by a gene product is abnormal, when a gene or the bound RNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0002132
is_a: PHIPO:0000142 ! pathogen RNA binding phenotype
creation_date: 2018-09-25T13:37:19Z

[Term]
id: PHIPO:0000153
name: normal pathogen RNA binding
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which occurrence of RNA binding by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0002357
is_a: PHIPO:0000142 ! pathogen RNA binding phenotype
created_by: alaynecuzick
creation_date: 2018-09-25T13:37:37Z

[Term]
id: PHIPO:0000154
name: abolished pathogen RNA binding
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which RNA binding by a gene product does not occur, when a gene or the bound RNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0002133
is_a: PHIPO:0000152 ! abnormal pathogen RNA binding
created_by: alaynecuzick
creation_date: 2018-09-25T13:37:57Z

[Term]
id: PHIPO:0000155
name: decreased pathogen RNA binding
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which occurrence of RNA binding by a gene product is decreased, when a gene or the bound RNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0002134
is_a: PHIPO:0000152 ! abnormal pathogen RNA binding
created_by: alaynecuzick
creation_date: 2018-09-25T13:38:20Z

[Term]
id: PHIPO:0000156
name: increased pathogen RNA binding
namespace: pathogen_phenotype
def: "A pathogen (molecular function??) phenotype in which occurrence of RNA binding by a gene product is increased, when a gene or the bound RNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0002135
is_a: PHIPO:0000152 ! abnormal pathogen RNA binding
created_by: alaynecuzick
creation_date: 2018-09-25T13:38:31Z

[Term]
id: PHIPO:0000157
name: pathogen motility phenotype
namespace: pathogen_phenotype
is_a: PHIPO:0000002 ! pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T12:11:36Z

[Term]
id: PHIPO:0000158
name: pathogen binding phenotype
namespace: pathogen_phenotype
def: "A pathogen phenotype that affects the binding of a gene product to another substance. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0001092
is_a: PHIPO:0000002 ! pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T12:12:12Z

[Term]
id: PHIPO:0000159
name: pathogen chemical target phenotype
namespace: pathogen_phenotype
is_a: PHIPO:0000002 ! pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T12:12:52Z

[Term]
id: PHIPO:0000160
name: pathogen penetration assay phenotype
namespace: pathogen_phenotype
is_a: PHIPO:0000002 ! pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T12:13:47Z

[Term]
id: PHIPO:0000161
name: pathogen reproductive phenotype
namespace: pathogen_phenotype
is_a: PHIPO:0000002 ! pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T12:14:40Z

[Term]
id: PHIPO:0000162
name: pathogen organism growth phenotype
namespace: pathogen_phenotype
is_a: PHIPO:0000002 ! pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T12:15:24Z

[Term]
id: PHIPO:0000163
name: abnormal organism growth phenotype
namespace: pathogen_phenotype
is_a: PHIPO:0000162 ! pathogen organism growth phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T12:18:47Z

[Term]
id: PHIPO:0000164
name: pathogen host interaction binding phenotype
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype that affects the binding of a gene product to another substance. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0001092
is_a: PHIPO:0000001 ! pathogen host interaction phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T12:21:51Z

[Term]
id: PHIPO:0000165
name: host binding phenotype
namespace: host_phenotype
def: "A host phenotype that affects the binding of a gene product to another substance. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0001092
is_a: PHIPO:0000003 ! host phenotype
intersection_of: PHIPO:0000003 ! host phenotype
intersection_of: RO:0000052 GO:0005488
relationship: RO:0000052 GO:0005488
created_by: alaynecuzick
creation_date: 2018-10-01T12:22:45Z

[Term]
id: PHIPO:0000166
name: host RNA binding phenotype
namespace: host_phenotype
def: "A host phenotype that affects RNA binding. The relevant gene product may be encoded by the mutated gene, or by a different gene." []
comment: where to add 'host' in logical definition?
xref: FYPO:0002131
is_a: PHIPO:0000165 ! host binding phenotype
intersection_of: PHIPO:0000003 ! host phenotype
intersection_of: RO:0000052 GO:0003723
relationship: RO:0000052 GO:0003723
created_by: alaynecuzick
creation_date: 2018-10-01T12:46:24Z

[Term]
id: PHIPO:0000167
name: pathogen host interaction RNA binding phenotype
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype that affects RNA binding. The relevant gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0002131
is_a: PHIPO:0000164 ! pathogen host interaction binding phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T12:54:51Z

[Term]
id: PHIPO:0000168
name: abnormal pathogen host interaction RNA binding
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which occurrence of RNA binding by a gene product is abnormal, when a gene or the bound RNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0002132
is_a: PHIPO:0000167 ! pathogen host interaction RNA binding phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T12:56:01Z

[Term]
id: PHIPO:0000169
name: abnormal host RNA binding
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which occurrence of RNA binding by a gene product is abnormal, when a gene or the bound RNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
comment: where to add 'host' in logical definition?
xref: FYPO:0002132
is_a: PATO:0000001
is_a: PHIPO:0000166 ! host RNA binding phenotype
intersection_of: PATO:0000001
intersection_of: PHIPO:0000304 PATO:0000460 ! qualifier
intersection_of: RO:0000052 GO:0003723
relationship: PHIPO:0000304 PATO:0000460 ! qualifier
created_by: alaynecuzick
creation_date: 2018-10-01T12:56:11Z

[Term]
id: PHIPO:0000170
name: normal host RNA binding
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which occurrence of RNA binding by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene." []
comment: where to add 'host' in logical definition?
xref: FYPO:0002357
is_a: PATO:0000001
is_a: PHIPO:0000166 ! host RNA binding phenotype
intersection_of: PATO:0000001
intersection_of: PHIPO:0000304 PATO:0000461 ! qualifier
intersection_of: RO:0000052 GO:0003723
relationship: PHIPO:0000304 PATO:0000461 ! qualifier
created_by: alaynecuzick
creation_date: 2018-10-01T12:57:11Z

[Term]
id: PHIPO:0000171
name: normal pathogen host interaction RNA binding
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which occurrence of RNA binding by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0002357
is_a: PHIPO:0000167 ! pathogen host interaction RNA binding phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T12:57:15Z

[Term]
id: PHIPO:0000172
name: abolished pathogen host interaction RNA binding
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which RNA binding by a gene product does not occur, when a gene or the bound RNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0002133
is_a: PHIPO:0000168 ! abnormal pathogen host interaction RNA binding
created_by: alaynecuzick
creation_date: 2018-10-01T13:04:43Z

[Term]
id: PHIPO:0000173
name: abolished host RNA binding
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which RNA binding by a gene product does not occur, when a gene or the bound RNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
comment: where to add 'host' in logical definition?
xref: FYPO:0002133
is_a: PATO:0001558
is_a: PHIPO:0000169 ! abnormal host RNA binding
intersection_of: PATO:0001558
intersection_of: PHIPO:0000304 PATO:0000460 ! qualifier
intersection_of: RO:0000052 GO:0003723
created_by: alaynecuzick
creation_date: 2018-10-01T13:04:47Z

[Term]
id: PHIPO:0000174
name: decreased pathogen host interaction RNA binding
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which occurrence of RNA binding by a gene product is decreased, when a gene or the bound RNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0002134
is_a: PHIPO:0000168 ! abnormal pathogen host interaction RNA binding
created_by: alaynecuzick
creation_date: 2018-10-01T13:05:26Z

[Term]
id: PHIPO:0000175
name: decreased host RNA binding
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which occurrence of RNA binding by a gene product is decreased, when a gene or the bound RNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
comment: where to add 'host' in logical definition?
xref: FYPO:0002134
is_a: PATO:0002052
is_a: PHIPO:0000169 ! abnormal host RNA binding
intersection_of: PATO:0002052
intersection_of: RO:0000052 GO:0003723
created_by: alaynecuzick
creation_date: 2018-10-01T13:05:29Z

[Term]
id: PHIPO:0000176
name: increased pathogen host interaction RNA binding
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which occurrence of RNA binding by a gene product is increased, when a gene or the bound RNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0002135
is_a: PHIPO:0000168 ! abnormal pathogen host interaction RNA binding
created_by: alaynecuzick
creation_date: 2018-10-01T13:05:50Z

[Term]
id: PHIPO:0000177
name: increased host RNA binding
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which occurrence of RNA binding by a gene product is increased, when a gene or the bound RNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
comment: where to add 'host' in logical definition?
xref: FYPO:0002135
is_a: PATO:0002051
is_a: PHIPO:0000169 ! abnormal host RNA binding
intersection_of: PATO:0002051
intersection_of: RO:0000052 GO:0003723
created_by: alaynecuzick
creation_date: 2018-10-01T13:05:53Z

[Term]
id: PHIPO:0000178
name: pathogen host interaction DNA binding phenotype
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype that affects DNA binding. The affected gene product may be encoded by the mutated gene, or by a different gene." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.\n\nLogical definition\nphenotype (this would need to be PHIPO pathogen phenotype/host phenotype or disease formation phenotype) and (inheres_in some DNA binding (GO:0003677)
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0000653
is_a: PHIPO:0000164 ! pathogen host interaction binding phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T13:09:13Z

[Term]
id: PHIPO:0000179
name: host DNA binding phenotype
namespace: host_phenotype
def: "A host phenotype that affects DNA binding. The affected gene product may be encoded by the mutated gene, or by a different gene." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0000653
is_a: PHIPO:0000165 ! host binding phenotype
intersection_of: PHIPO:0000003 ! host phenotype
intersection_of: RO:0000052 GO:0003677
relationship: RO:0000052 GO:0003677
created_by: alaynecuzick
creation_date: 2018-10-01T13:09:16Z

[Term]
id: PHIPO:0000180
name: abnormal pathogen host interaction DNA binding
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which occurrence of DNA binding by a gene product is abnormal, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0000656
is_a: PHIPO:0000178 ! pathogen host interaction DNA binding phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T13:09:23Z

[Term]
id: PHIPO:0000181
name: abnormal host DNA binding
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which occurrence of DNA binding by a gene product is abnormal, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
comment: where to add 'host' in logical definition?
xref: FYPO:0000656
is_a: PATO:0000001
is_a: PHIPO:0000179 ! host DNA binding phenotype
intersection_of: PATO:0000001
intersection_of: PHIPO:0000304 PATO:0000460 ! qualifier
intersection_of: RO:0000052 GO:0003677
relationship: PHIPO:0000304 PATO:0000460 ! qualifier
created_by: alaynecuzick
creation_date: 2018-10-01T13:09:27Z

[Term]
id: PHIPO:0000182
name: normal host DNA binding
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which occurrence of DNA binding by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene." []
comment: where to add 'host' in logical definition?
xref: FYPO:0000655
is_a: PATO:0000001
is_a: PHIPO:0000179 ! host DNA binding phenotype
intersection_of: PATO:0000001
intersection_of: PHIPO:0000304 PATO:0000461 ! qualifier
intersection_of: RO:0000052 GO:0003677
relationship: PHIPO:0000304 PATO:0000461 ! qualifier
created_by: alaynecuzick
creation_date: 2018-10-01T13:09:35Z

[Term]
id: PHIPO:0000183
name: normal pathogen host interaction DNA binding
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which occurrence of DNA binding by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene." []
comment: Logical defintion\nquality (PATO:0000001) and (inheres_in some DNA binding (GO:0003677)) and (qualifier (??) some normal PATO:0000461)
xref: FYPO:0000655
is_a: PHIPO:0000178 ! pathogen host interaction DNA binding phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T13:09:42Z

[Term]
id: PHIPO:0000184
name: abnormal host multiple protein binding to DNA
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which the binding of two or more proteins to DNA is abnormal. The proteins may bind simultaneously or sequentially, but both or all would normally be present together on DNA at some time. One affected gene product may be encoded by the mutated gene, or all may be encoded by different genes." []
comment: no logical definition in FYPO
xref: FYPO:0006555
is_a: PHIPO:0000181 ! abnormal host DNA binding
created_by: alaynecuzick
creation_date: 2018-10-01T13:12:32Z

[Term]
id: PHIPO:0000185
name: abnormal pathogen host interaction multiple protein binding to DNA
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which the binding of two or more proteins to DNA is abnormal. The proteins may bind simultaneously or sequentially, but both or all would normally be present together on DNA at some time. One affected gene product may be encoded by the mutated gene, or all may be encoded by different genes." []
xref: FYPO:0006555
is_a: PHIPO:0000180 ! abnormal pathogen host interaction DNA binding
created_by: alaynecuzick
creation_date: 2018-10-01T13:12:43Z

[Term]
id: PHIPO:0000186
name: abolished host DNA binding
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which DNA binding by a gene product does not occur, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0000659
is_a: PATO:0001558
is_a: PHIPO:0000181 ! abnormal host DNA binding
intersection_of: PATO:0001558
intersection_of: PHIPO:0000304 PATO:0000460 ! qualifier
intersection_of: RO:0000052 GO:0003677
created_by: alaynecuzick
creation_date: 2018-10-01T13:12:57Z

[Term]
id: PHIPO:0000187
name: abolished pathogen host interaction DNA binding
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which DNA binding by a gene product does not occur, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0000659
is_a: PHIPO:0000180 ! abnormal pathogen host interaction DNA binding
created_by: alaynecuzick
creation_date: 2018-10-01T13:13:16Z

[Term]
id: PHIPO:0000188
name: altered host DNA binding specificity
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which a gene product that normally binds to a specific DNA sequence instead binds to a different sequence when a gene is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
comment: no logical definition in FYPO
xref: FYPO:0003735
is_a: PHIPO:0000181 ! abnormal host DNA binding
created_by: alaynecuzick
creation_date: 2018-10-01T13:13:27Z

[Term]
id: PHIPO:0000189
name: altered pathogen host interaction DNA binding specificity
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which a gene product that normally binds to a specific DNA sequence instead binds to a different sequence when a gene is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0003735
is_a: PHIPO:0000180 ! abnormal pathogen host interaction DNA binding
created_by: alaynecuzick
creation_date: 2018-10-01T13:13:36Z

[Term]
id: PHIPO:0000190
name: decreased host DNA binding
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which occurrence of DNA binding by a gene product is decreased, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
comment: where to add 'host' in logical definition?
xref: FYPO:0000658
is_a: PATO:0002052
is_a: PHIPO:0000181 ! abnormal host DNA binding
intersection_of: PATO:0002052
intersection_of: RO:0000052 GO:0003677
created_by: alaynecuzick
creation_date: 2018-10-01T13:14:10Z

[Term]
id: PHIPO:0000191
name: decreased pathogen host interaction DNA binding
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which occurrence of DNA binding by a gene product is decreased, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0000658
is_a: PHIPO:0000180 ! abnormal pathogen host interaction DNA binding
created_by: alaynecuzick
creation_date: 2018-10-01T13:14:20Z

[Term]
id: PHIPO:0000192
name: increased host DNA binding
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which occurrence of DNA binding by a gene product is increased, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
comment: where to add 'host' in logical definition?
xref: FYPO:0000657
is_a: PATO:0002051
is_a: PHIPO:0000181 ! abnormal host DNA binding
intersection_of: PATO:0002051
intersection_of: RO:0000052 GO:0003677
created_by: alaynecuzick
creation_date: 2018-10-01T13:14:29Z

[Term]
id: PHIPO:0000193
name: increased pathogen host interaction DNA binding
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which occurrence of DNA binding by a gene product is increased, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0000657
is_a: PHIPO:0000180 ! abnormal pathogen host interaction DNA binding
created_by: alaynecuzick
creation_date: 2018-10-01T13:14:39Z

[Term]
id: PHIPO:0000195
name: host protein protein interaction phenotype
namespace: host_phenotype
def: "A host phenotype that protein affects the binding of one protein to another. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0000702
is_a: PHIPO:0000165 ! host binding phenotype
intersection_of: PHIPO:0000003 ! host phenotype
intersection_of: RO:0000052 GO:0005515
relationship: RO:0000052 GO:0005515
created_by: alaynecuzick
creation_date: 2018-10-01T13:26:34Z

[Term]
id: PHIPO:0000196
name: abnormal host protein protein interaction
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which the binding of one protein to another is abnormal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0000704
is_a: PATO:0000001
is_a: PHIPO:0000195 ! host protein protein interaction phenotype
intersection_of: PATO:0000001
intersection_of: PHIPO:0000304 PATO:0000460 ! qualifier
intersection_of: RO:0000052 GO:0005515
relationship: PHIPO:0000304 PATO:0000460 ! qualifier
created_by: alaynecuzick
creation_date: 2018-10-01T13:27:25Z

[Term]
id: PHIPO:0000197
name: abnormal pathogen host protein protein interaction
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which the binding of one protein to another is abnormal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0000704
is_a: PHIPO:0000131 ! pathogen host protein protein interaction phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T13:27:34Z

[Term]
id: PHIPO:0000198
name: normal host protein protein interaction
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which the binding of one protein to another is normal (i.e. indistinguishable from wild type). The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0000703
is_a: PATO:0000001
is_a: PHIPO:0000195 ! host protein protein interaction phenotype
intersection_of: PATO:0000001
intersection_of: PHIPO:0000304 PATO:0000461 ! qualifier
intersection_of: RO:0000052 GO:0005515
relationship: PHIPO:0000304 PATO:0000461 ! qualifier
created_by: alaynecuzick
creation_date: 2018-10-01T13:27:49Z

[Term]
id: PHIPO:0000199
name: normal pathogen host protein protein interaction
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which the binding of one protein to another is normal (i.e. indistinguishable from wild type). The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0000703
is_a: PHIPO:0000131 ! pathogen host protein protein interaction phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T13:27:56Z

[Term]
id: PHIPO:0000200
name: normal host protein complex binding
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which the binding of one protein to a protein complex is normal (i.e. indistinguishable from wild type). The protein whose binding to the protein complex is assayed may be encoded by the mutated gene, or may be encoded by a different gene." []
xref: FYPO:0005232
is_a: PHIPO:0000198 ! normal host protein protein interaction
intersection_of: PATO:0000001
intersection_of: PHIPO:0000304 PATO:0000461 ! qualifier
intersection_of: RO:0000052 GO:0044877
relationship: RO:0000052 GO:0044877
created_by: alaynecuzick
creation_date: 2018-10-01T13:28:13Z

[Term]
id: PHIPO:0000201
name: normal pathogen host protein complex binding
namespace: pathogen_host_interaction_phenotype
def: "A pathogen (molecular function??) phenotype in which the binding of one protein to a protein complex is normal (i.e. indistinguishable from wild type). The protein whose binding to the protein complex is assayed may be encoded by the mutated gene, or may be encoded by a different gene." []
xref: FYPO:0005232
is_a: PHIPO:0000199 ! normal pathogen host protein protein interaction
created_by: alaynecuzick
creation_date: 2018-10-01T13:28:22Z

[Term]
id: PHIPO:0000202
name: abnormal pathogen host protein complex binding
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which the binding of one protein to a protein complex is abnormal. The protein whose binding to the protein complex is affected may be encoded by the mutated gene, or may be encoded by a different gene." []
xref: FYPO:0003591
is_a: PHIPO:0000197 ! abnormal pathogen host protein protein interaction
created_by: alaynecuzick
creation_date: 2018-10-01T13:31:30Z

[Term]
id: PHIPO:0000203
name: abnormal host protein complex binding
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which the binding of one protein to a protein complex is abnormal. The protein whose binding to the protein complex is affected may be encoded by the mutated gene, or may be encoded by a different gene." []
xref: FYPO:0003591
is_a: PHIPO:0000196 ! abnormal host protein protein interaction
intersection_of: PATO:0000001
intersection_of: PHIPO:0000304 PATO:0000460 ! qualifier
intersection_of: RO:0000052 GO:0044877
relationship: RO:0000052 GO:0044877
created_by: alaynecuzick
creation_date: 2018-10-01T13:31:34Z

[Term]
id: PHIPO:0000204
name: abolished pathogen host protein protein interaction
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which the binding of one protein to another does not occur. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0000705
is_a: PHIPO:0000197 ! abnormal pathogen host protein protein interaction
created_by: alaynecuzick
creation_date: 2018-10-01T13:31:59Z

[Term]
id: PHIPO:0000205
name: abolished host protein protein interaction
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which the binding of one protein to another does not occur. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0000705
is_a: PATO:0001558
is_a: PHIPO:0000196 ! abnormal host protein protein interaction
intersection_of: PATO:0001558
intersection_of: PHIPO:0000304 PATO:0000460 ! qualifier
intersection_of: RO:0000052 GO:0005515
created_by: alaynecuzick
creation_date: 2018-10-01T13:32:01Z

[Term]
id: PHIPO:0000206
name: altered pathogen host protein binding specificity
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which a mutation causes a gene product to bind to one or more proteins with different specificity from normal. For example, a protein may bind to a protein in a mutant that it does not bind in wild type. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0005119
is_a: PHIPO:0000197 ! abnormal pathogen host protein protein interaction
created_by: alaynecuzick
creation_date: 2018-10-01T13:32:15Z

[Term]
id: PHIPO:0000207
name: altered host protein binding specificity
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which a mutation causes a gene product to bind to one or more proteins with different specificity from normal. For example, a protein may bind to a protein in a mutant that it does not bind in wild type. The affected gene product may be encoded by the mutated gene, or by a different gene." []
xref: FYPO:0005119
is_a: PHIPO:0000196 ! abnormal host protein protein interaction
created_by: alaynecuzick
creation_date: 2018-10-01T13:32:18Z

[Term]
id: PHIPO:0000208
name: decreased duration of pathogen host protein protein interaction
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which the binding of one protein to another occurs for a shorter time than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0005785
is_a: PHIPO:0000197 ! abnormal pathogen host protein protein interaction
created_by: alaynecuzick
creation_date: 2018-10-01T13:32:28Z

[Term]
id: PHIPO:0000209
name: decreased duration of host protein protein interaction
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which the binding of one protein to another occurs for a shorter time than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0005785
is_a: PATO:0000499
is_a: PHIPO:0000196 ! abnormal host protein protein interaction
intersection_of: PATO:0000499
intersection_of: RO:0000052 GO:0005515
created_by: alaynecuzick
creation_date: 2018-10-01T13:32:31Z

[Term]
id: PHIPO:0000210
name: decreased extent and duration of pathogen host protein protein interaction
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which the binding of one protein to another occurs to a lower extent, and for a shorter time, than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0005784
is_a: PHIPO:0000197 ! abnormal pathogen host protein protein interaction
created_by: alaynecuzick
creation_date: 2018-10-01T13:32:42Z

[Term]
id: PHIPO:0000211
name: decreased extent and duration of host protein protein interaction
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which the binding of one protein to another occurs to a lower extent, and for a shorter time, than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0005784
is_a: PHIPO:0000196 ! abnormal host protein protein interaction
intersection_of: PHIPO:0000196 ! abnormal host protein protein interaction
intersection_of: has_part PHIPO:0000209 ! decreased duration of host protein protein interaction
intersection_of: has_part PHIPO:0000213 ! decreased host protein protein interaction
relationship: has_part PHIPO:0000209 ! decreased duration of host protein protein interaction
relationship: has_part PHIPO:0000213 ! decreased host protein protein interaction
created_by: alaynecuzick
creation_date: 2018-10-01T13:32:46Z

[Term]
id: PHIPO:0000212
name: decreased pathogen host protein protein interaction
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which the binding of one protein to another occurs to a lower extent than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0001645
is_a: PHIPO:0000197 ! abnormal pathogen host protein protein interaction
created_by: alaynecuzick
creation_date: 2018-10-01T13:33:00Z

[Term]
id: PHIPO:0000213
name: decreased host protein protein interaction
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which the binding of one protein to another occurs to a lower extent than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0001645
is_a: PATO:0002052
is_a: PHIPO:0000196 ! abnormal host protein protein interaction
intersection_of: PATO:0002052
intersection_of: RO:0000052 GO:0005515
created_by: alaynecuzick
creation_date: 2018-10-01T13:33:03Z

[Term]
id: PHIPO:0000214
name: increased pathogen host protein protein interaction
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (molecular function??) phenotype in which the binding of one protein to another occurs to a greater extent than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0001571
is_a: PHIPO:0000197 ! abnormal pathogen host protein protein interaction
created_by: alaynecuzick
creation_date: 2018-10-01T13:33:15Z

[Term]
id: PHIPO:0000215
name: increased host protein protein interaction
namespace: host_phenotype
def: "A host (molecular function??) phenotype in which the binding of one protein to another occurs to a greater extent than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes." []
xref: FYPO:0001571
is_a: PATO:0002051
is_a: PHIPO:0000196 ! abnormal host protein protein interaction
intersection_of: PATO:0002051
intersection_of: RO:0000052 GO:0005515
created_by: alaynecuzick
creation_date: 2018-10-01T13:33:18Z

[Term]
id: PHIPO:0000216
name: host localization phenotype
namespace: host_phenotype
def: "A host phenotype that affects the localization of a structure or substance in a cell (QUERY? organism)." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0000138
is_a: PHIPO:0000003 ! host phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T13:42:29Z

[Term]
id: PHIPO:0000217
name: host protein localization phenotype
namespace: host_phenotype
def: "A host phenotype that affects the localization of a protein in a cell." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0002333
is_a: PHIPO:0000216 ! host localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T13:43:20Z

[Term]
id: PHIPO:0000218
name: host RNA localization phenotype
namespace: host_phenotype
def: "A host phenotype that affects the localization of an RNA in a cell." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0004853
is_a: PHIPO:0000216 ! host localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T13:43:40Z

[Term]
id: PHIPO:0000219
name: host transport phenotype
namespace: host_phenotype
def: "A host (cell process???) phenotype that affects a transport process." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0000149
is_a: PHIPO:0000216 ! host localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-01T13:44:10Z

[Term]
id: PHIPO:0000220
name: abnormal host transport
namespace: host_phenotype
def: "A host phenotype in which a specific transport process is abnormal." []
xref: FYPO:0001720
is_a: PHIPO:0000219 ! host transport phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T08:53:44Z

[Term]
id: PHIPO:0000221
name: normal host protein transport
namespace: host_phenotype
def: "A host (cellular process??) phenotype in which protein transport is normal (i.e. indistinguishable from wild type)." []
xref: FYPO:0005747
is_a: PHIPO:0000219 ! host transport phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T08:53:54Z

[Term]
id: PHIPO:0000222
name: abnormal host protein transport
namespace: host_phenotype
def: "A host (cellular process??) phenotype in which protein transport is abnormal." []
xref: FYPO:0005744
is_a: PHIPO:0000220 ! abnormal host transport
created_by: alaynecuzick
creation_date: 2018-10-02T08:56:00Z

[Term]
id: PHIPO:0000223
name: abnormal host nuclear transport
namespace: host_phenotype
def: "A host (cellular process??) phenotype in which nuclear transport is abnormal." []
xref: FYPO:0005573
is_a: PHIPO:0000220 ! abnormal host transport
created_by: alaynecuzick
creation_date: 2018-10-02T08:58:26Z

[Term]
id: PHIPO:0000224
name: abnormal host endocytosis
namespace: host_phenotype
def: "A host (cellular process???) phenotype in which endocytosis is abnormal. Endocytosis is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein." []
xref: FYPO:0003886
is_a: PHIPO:0000220 ! abnormal host transport
created_by: alaynecuzick
creation_date: 2018-10-02T08:59:23Z

[Term]
id: PHIPO:0000225
name: abnormal host vacuolar transport
namespace: host_phenotype
def: "A host (cellular process??) phenotype in which vacuolar transport is abnormal." []
xref: FYPO:0003578
is_a: PHIPO:0000220 ! abnormal host transport
created_by: alaynecuzick
creation_date: 2018-10-02T09:00:28Z

[Term]
id: PHIPO:0000226
name: abnormal host RNA localization
namespace: host_phenotype
def: "A host phenotype in which the localization of an RNA in a cell is abnormal. An RNA may be observed in a place where it is not normally found, absent from a place where it is normally found, or both." []
xref: FYPO:0003057
is_a: PHIPO:0000218 ! host RNA localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T09:09:52Z

[Term]
id: PHIPO:0000227
name: normal host RNA localization
namespace: host_phenotype
def: "A host phenotype in which the localization of an RNA in a cell is normal (i.e. indistinguishable from wild type)." []
xref: FYPO:0003058
is_a: PHIPO:0000218 ! host RNA localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T09:10:09Z

[Term]
id: PHIPO:0000228
name: abnormal host protein localization
namespace: host_phenotype
def: "A host phenotype that affects the localization of a protein in a cell." []
xref: FYPO:0002333
is_a: PHIPO:0000217 ! host protein localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T09:12:44Z

[Term]
id: PHIPO:0000229
name: normal host protein localization
namespace: host_phenotype
def: "A cell phenotype in which the localization of a protein in a cell is normal (i.e. indistinguishable from wild type)." []
xref: FYPO:0003627
is_a: PHIPO:0000217 ! host protein localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T09:12:59Z

[Term]
id: PHIPO:0000230
name: normal host protein localization to nucleus
namespace: host_phenotype
def: "A host phenotype in which the localization of a protein to the nucleus is normal (i.e. indistinguishable from wild type)." []
xref: FYPO:0006553
is_a: PHIPO:0000229 ! normal host protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T09:15:34Z

[Term]
id: PHIPO:0000231
name: abnormal host protein complex localization
namespace: host_phenotype
def: "A host phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein complex is abnormal." []
xref: FYPO:0001440
is_a: PHIPO:0000228 ! abnormal host protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T09:17:44Z

[Term]
id: PHIPO:0000232
name: abnormal host protein localization to nucleus
namespace: host_phenotype
def: "A host phenotype in which the localization of a protein to the nucleus is abnormal." []
comment: Encompasses both presence of proteins not normally found in the nucleus and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
xref: FYPO:0002956
is_a: PHIPO:0000228 ! abnormal host protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T09:18:35Z

[Term]
id: PHIPO:0000233
name: abolished host protein localization
namespace: host_phenotype
def: "A host phenotype in which a protein does not localize to, and is therefore absent from, a place where it is normally found." []
comment: If this term is used, we recommend noting which protein(s) were used in the assay.
xref: FYPO:0001375
is_a: PHIPO:0000228 ! abnormal host protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T09:19:27Z

[Term]
id: PHIPO:0000234
name: abolished host protein localization to nucleus
namespace: host_phenotype
def: "A host phenotype in which the localization of a protein to the nucleus is abolished." []
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
xref: FYPO:0003450
is_a: PHIPO:0000228 ! abnormal host protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T09:20:17Z

[Term]
id: PHIPO:0000235
name: pathogen localization phenotype
namespace: pathogen_phenotype
def: "A pathogen phenotype that affects the localization of a structure or substance in a cell (QUERY? organism)." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0000138
is_a: PHIPO:0000002 ! pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:12:56Z

[Term]
id: PHIPO:0000236
name: pathogen host interaction localization phenotype
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype that affects the localization of a structure or substance in a cell (QUERY? organism)." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0000138
is_a: PHIPO:0000001 ! pathogen host interaction phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:13:04Z

[Term]
id: PHIPO:0000237
name: pathogen protein localization phenotype
namespace: pathogen_phenotype
def: "A pathogen phenotype that affects the localization of a protein in a cell." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0002333
is_a: PHIPO:0000235 ! pathogen localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:13:36Z

[Term]
id: PHIPO:0000238
name: pathogen host interaction protein localization phenotype
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype that affects the localization of a protein in a cell." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0002333
is_a: PHIPO:0000236 ! pathogen host interaction localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:13:39Z

[Term]
id: PHIPO:0000239
name: abnormal pathogen protein localization
namespace: pathogen_phenotype
def: "A pathogen phenotype that affects the localization of a protein in a cell." []
xref: FYPO:0002333
is_a: PHIPO:0000237 ! pathogen protein localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:14:02Z

[Term]
id: PHIPO:0000240
name: abnormal pathogen host interaction protein localization
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype that affects the localization of a protein in a cell." []
xref: FYPO:0002333
is_a: PHIPO:0000238 ! pathogen host interaction protein localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:14:05Z

[Term]
id: PHIPO:0000241
name: abnormal pathogen protein complex localization
namespace: pathogen_phenotype
def: "A pathogen phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein complex is abnormal." []
xref: FYPO:0001440
is_a: PHIPO:0000239 ! abnormal pathogen protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T10:14:50Z

[Term]
id: PHIPO:0000242
name: abnormal pathogen host interaction protein complex localization
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein complex is abnormal." []
xref: FYPO:0001440
is_a: PHIPO:0000240 ! abnormal pathogen host interaction protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T10:14:53Z

[Term]
id: PHIPO:0000243
name: abnormal pathogen host interaction protein localization to nucleus
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype in which the localization of a protein to the nucleus is abnormal. (Which nucleus? pathogen or host?)" []
comment: Encompasses both presence of proteins not normally found in the nucleus and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
xref: FYPO:0002956
is_a: PHIPO:0000240 ! abnormal pathogen host interaction protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T10:16:31Z

[Term]
id: PHIPO:0000244
name: abnormal pathogen protein localization to nucleus
namespace: pathogen_phenotype
def: "A pathogen phenotype in which the localization of a protein to the nucleus is abnormal." []
comment: Encompasses both presence of proteins not normally found in the nucleus and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
xref: FYPO:0002956
is_a: PHIPO:0000239 ! abnormal pathogen protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T10:16:37Z

[Term]
id: PHIPO:0000245
name: abolished pathogen protein localization
namespace: pathogen_phenotype
def: "A pathogen phenotype in which a protein does not localize to, and is therefore absent from, a place where it is normally found." []
comment: If this term is used, we recommend noting which protein(s) were used in the assay.
xref: FYPO:0001375
is_a: PHIPO:0000239 ! abnormal pathogen protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T10:17:52Z

[Term]
id: PHIPO:0000246
name: abolished pathogen host interaction protein localization
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype in which a protein does not localize to, and is therefore absent from, a place where it is normally found." []
comment: If this term is used, we recommend noting which protein(s) were used in the assay.
xref: FYPO:0001375
is_a: PHIPO:0000240 ! abnormal pathogen host interaction protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T10:17:55Z

[Term]
id: PHIPO:0000247
name: abolished pathogen host interaction protein localization to nucleus
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype in which the localization of a protein to the nucleus is abolished." []
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
xref: FYPO:0003450
is_a: PHIPO:0000240 ! abnormal pathogen host interaction protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T10:19:22Z

[Term]
id: PHIPO:0000248
name: abolished pathogen protein localization to nucleus
namespace: pathogen_phenotype
def: "A pathogen phenotype in which the localization of a protein to the nucleus is abolished." []
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
xref: FYPO:0003450
is_a: PHIPO:0000239 ! abnormal pathogen protein localization
created_by: alaynecuzick
creation_date: 2018-10-02T10:19:27Z

[Term]
id: PHIPO:0000249
name: pathogen RNA localization phenotype
namespace: pathogen_phenotype
def: "A pathogen phenotype that affects the localization of an RNA in a cell." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0004853
is_a: PHIPO:0000235 ! pathogen localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:20:15Z

[Term]
id: PHIPO:0000250
name: pathogen host interaction RNA localization phenotype
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype that affects the localization of an RNA in a cell." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0004853
is_a: PHIPO:0000236 ! pathogen host interaction localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:20:17Z

[Term]
id: PHIPO:0000251
name: abnormal pathogen RNA localization
namespace: pathogen_phenotype
def: "A pathogen phenotype in which the localization of an RNA in a cell is abnormal. An RNA may be observed in a place where it is not normally found, absent from a place where it is normally found, or both." []
xref: FYPO:0003057
is_a: PHIPO:0000249 ! pathogen RNA localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:20:49Z

[Term]
id: PHIPO:0000252
name: abnormal pathogen host interaction RNA localization
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype in which the localization of an RNA in a cell is abnormal. An RNA may be observed in a place where it is not normally found, absent from a place where it is normally found, or both." []
xref: FYPO:0003057
is_a: PHIPO:0000250 ! pathogen host interaction RNA localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:20:53Z

[Term]
id: PHIPO:0000253
name: normal pathogen RNA localization
namespace: pathogen_phenotype
def: "A pathogen phenotype in which the localization of an RNA in a cell is normal (i.e. indistinguishable from wild type)." []
xref: FYPO:0003058
is_a: PHIPO:0000249 ! pathogen RNA localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:21:19Z

[Term]
id: PHIPO:0000254
name: normal pathogen host interaction RNA localization
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype in which the localization of an RNA in a cell is normal (i.e. indistinguishable from wild type)." []
xref: FYPO:0003058
is_a: PHIPO:0000250 ! pathogen host interaction RNA localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:21:22Z

[Term]
id: PHIPO:0000255
name: pathogen host interaction transport phenotype
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (cell process???) phenotype that affects a transport process." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0000149
is_a: PHIPO:0000236 ! pathogen host interaction localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:21:45Z

[Term]
id: PHIPO:0000256
name: pathogen transport phenotype
namespace: pathogen_phenotype
def: "A pathogen (cell process???) phenotype that affects a transport process." []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
xref: FYPO:0000149
is_a: PHIPO:0000235 ! pathogen localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:21:48Z

[Term]
id: PHIPO:0000257
name: abnormal pathogen transport
namespace: pathogen_phenotype
def: "A pathogen phenotype in which a specific transport process is abnormal." []
xref: FYPO:0001720
is_a: PHIPO:0000256 ! pathogen transport phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:22:11Z

[Term]
id: PHIPO:0000258
name: abnormal pathogen host interaction transport
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype in which a specific transport process is abnormal." []
xref: FYPO:0001720
is_a: PHIPO:0000255 ! pathogen host interaction transport phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:22:15Z

[Term]
id: PHIPO:0000259
name: normal pathogen protein transport
namespace: pathogen_phenotype
def: "A pathogen (cellular process??) phenotype in which protein transport is normal (i.e. indistinguishable from wild type)." []
xref: FYPO:0005747
is_a: PHIPO:0000256 ! pathogen transport phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:22:37Z

[Term]
id: PHIPO:0000260
name: normal pathogen host interaction protein transport
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (cellular process??) phenotype in which protein transport is normal (i.e. indistinguishable from wild type)." []
xref: FYPO:0005747
is_a: PHIPO:0000255 ! pathogen host interaction transport phenotype
created_by: alaynecuzick
creation_date: 2018-10-02T10:22:40Z

[Term]
id: PHIPO:0000261
name: abnormal pathogen endocytosis
namespace: pathogen_phenotype
def: "A pathogen (cellular process???) phenotype in which endocytosis is abnormal. Endocytosis is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein." []
xref: FYPO:0003886
is_a: PHIPO:0000257 ! abnormal pathogen transport
created_by: alaynecuzick
creation_date: 2018-10-02T10:22:57Z

[Term]
id: PHIPO:0000262
name: abnormal pathogen host interaction endocytosis
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (cellular process???) phenotype in which endocytosis is abnormal. Endocytosis is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein." []
xref: FYPO:0003886
is_a: PHIPO:0000258 ! abnormal pathogen host interaction transport
created_by: alaynecuzick
creation_date: 2018-10-02T10:23:00Z

[Term]
id: PHIPO:0000263
name: abnormal pathogen nuclear transport
namespace: pathogen_phenotype
def: "A pathogen (cellular process??) phenotype in which nuclear transport is abnormal." []
xref: FYPO:0005573
is_a: PHIPO:0000257 ! abnormal pathogen transport
created_by: alaynecuzick
creation_date: 2018-10-02T10:23:27Z

[Term]
id: PHIPO:0000264
name: abnormal pathogen host interaction nuclear transport
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (cellular process??) phenotype in which nuclear transport is abnormal." []
xref: FYPO:0005573
is_a: PHIPO:0000258 ! abnormal pathogen host interaction transport
created_by: alaynecuzick
creation_date: 2018-10-02T10:23:30Z

[Term]
id: PHIPO:0000265
name: abnormal pathogen protein transport
namespace: pathogen_phenotype
def: "A pathogen (cellular process??) phenotype in which protein transport is abnormal." []
xref: FYPO:0005744
is_a: PHIPO:0000257 ! abnormal pathogen transport
created_by: alaynecuzick
creation_date: 2018-10-02T10:24:39Z

[Term]
id: PHIPO:0000266
name: abnormal pathogen host interaction protein transport
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (cellular process??) phenotype in which protein transport is abnormal." []
xref: FYPO:0005744
is_a: PHIPO:0000258 ! abnormal pathogen host interaction transport
created_by: alaynecuzick
creation_date: 2018-10-02T10:24:41Z

[Term]
id: PHIPO:0000267
name: abnormal pathogen vacuolar transport
namespace: pathogen_phenotype
def: "A pathogen (cellular process??) phenotype in which vacuolar transport is abnormal." []
xref: FYPO:0003578
is_a: PHIPO:0000257 ! abnormal pathogen transport
created_by: alaynecuzick
creation_date: 2018-10-02T10:24:58Z

[Term]
id: PHIPO:0000268
name: abnormal pathogen host interaction vacuolar transport
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction (cellular process??) phenotype in which vacuolar transport is abnormal." []
xref: FYPO:0003578
is_a: PHIPO:0000258 ! abnormal pathogen host interaction transport
created_by: alaynecuzick
creation_date: 2018-10-02T10:25:00Z

[Term]
id: PHIPO:0000269
name: normal pathogen protein localization
namespace: pathogen_phenotype
def: "A pathogen phenotype in which the localization of a protein in a cell is normal (i.e. indistinguishable from wild type)." []
xref: FYPO:0003627
is_a: PHIPO:0000237 ! pathogen protein localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-03T11:05:06Z

[Term]
id: PHIPO:0000270
name: normal pathogen host interaction protein localization
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype in which the localization of a protein in a cell is normal (i.e. indistinguishable from wild type)." []
xref: FYPO:0003627
is_a: PHIPO:0000238 ! pathogen host interaction protein localization phenotype
created_by: alaynecuzick
creation_date: 2018-10-03T11:05:09Z

[Term]
id: PHIPO:0000271
name: normal pathogen protein localization to nucleus
namespace: pathogen_phenotype
def: "A pathogen phenotype in which the localization of a protein to the nucleus is normal (i.e. indistinguishable from wild type)." []
xref: FYPO:0006553
is_a: PHIPO:0000269 ! normal pathogen protein localization
created_by: alaynecuzick
creation_date: 2018-10-03T11:05:29Z

[Term]
id: PHIPO:0000272
name: normal pathogen host interaction protein localization to nucleus
namespace: pathogen_host_interaction_phenotype
def: "A pathogen host interaction phenotype in which the localization of a protein to the nucleus is normal (i.e. indistinguishable from wild type)." []
xref: FYPO:0006553
is_a: PHIPO:0000270 ! normal pathogen host interaction protein localization
created_by: alaynecuzick
creation_date: 2018-10-03T11:05:31Z

[Term]
id: PHIPO:0000273
name: host organism growth phenotype
namespace: host_phenotype
is_a: PHIPO:0000003 ! host phenotype
created_by: alaynecuzick
creation_date: 2018-10-03T13:38:13Z

[Term]
id: PHIPO:0000274
name: host reproductive phenotype
namespace: host_phenotype
is_a: PHIPO:0000003 ! host phenotype
created_by: alaynecuzick
creation_date: 2018-10-03T13:38:33Z

[Term]
id: PHIPO:0000275
name: abnormal host reproductive phenotype
namespace: host_phenotype
is_a: PHIPO:0000274 ! host reproductive phenotype
created_by: alaynecuzick
creation_date: 2018-10-03T13:39:04Z

[Term]
id: PHIPO:0000276
name: normal host reproductive phenotpye
namespace: host_phenotype
is_a: PHIPO:0000274 ! host reproductive phenotype
created_by: alaynecuzick
creation_date: 2018-10-03T13:39:23Z

[Term]
id: PHIPO:0000277
name: abnormal host organism growth phenotype
namespace: host_phenotype
is_a: PHIPO:0000273 ! host organism growth phenotype
created_by: alaynecuzick
creation_date: 2018-10-03T13:39:41Z

[Term]
id: PHIPO:0000278
name: normal host organism growth phenotype
namespace: host_phenotype
is_a: PHIPO:0000273 ! host organism growth phenotype
created_by: alaynecuzick
creation_date: 2018-10-03T13:40:03Z

[Term]
id: PHIPO:0000279
name: systemic phenotype
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000001 ! pathogen host interaction phenotype
created_by: alaynecuzick
creation_date: 2018-10-03T13:43:37Z

[Term]
id: PHIPO:0000280
name: effector phenotype
namespace: pathogen_host_interaction_phenotype
comment: PHI-base definition of 'effector'. (To be made into a class or requested from an external ontology to make into a logical definition).\n\nAn effector is an entity derived from a pathogenic or non-pathogenic species that either activates or suppresses host defences or other host responses.
is_a: PHIPO:0000001 ! pathogen host interaction phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T11:00:39Z

[Term]
id: PHIPO:0000281
name: host stature phenotype
namespace: host_phenotype
is_a: PHIPO:0000003 ! host phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T12:33:43Z

[Term]
id: PHIPO:0000282
name: abnormal stature
namespace: host_phenotype
is_a: PHIPO:0000281 ! host stature phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T12:33:56Z

[Term]
id: PHIPO:0000283
name: normal stature
namespace: host_phenotype
is_a: PHIPO:0000281 ! host stature phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T12:34:05Z

[Term]
id: PHIPO:0000284
name: host colour phenotype
namespace: host_phenotype
comment: do we want to precompose terms which actual colour in eg yellow, pale green, albino...\n\ncolour or pigment which is best language?
is_a: PHIPO:0000003 ! host phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T12:37:03Z

[Term]
id: PHIPO:0000285
name: abnormal colour
namespace: host_phenotype
is_a: PHIPO:0000284 ! host colour phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T12:37:16Z

[Term]
id: PHIPO:0000286
name: normal colour
namespace: host_phenotype
is_a: PHIPO:0000284 ! host colour phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T12:37:24Z

[Term]
id: PHIPO:0000287
name: increased intensity of colour
namespace: host_phenotype
is_a: PHIPO:0000285 ! abnormal colour
created_by: alaynecuzick
creation_date: 2018-10-05T12:38:26Z

[Term]
id: PHIPO:0000288
name: decreased intensity of colour
namespace: host_phenotype
is_a: PHIPO:0000285 ! abnormal colour
created_by: alaynecuzick
creation_date: 2018-10-05T12:38:39Z

[Term]
id: PHIPO:0000289
name: altered colour
namespace: host_phenotype
is_a: PHIPO:0000285 ! abnormal colour
created_by: alaynecuzick
creation_date: 2018-10-05T12:38:58Z

[Term]
id: PHIPO:0000290
name: colour present
namespace: host_phenotype
is_a: PHIPO:0000285 ! abnormal colour
created_by: alaynecuzick
creation_date: 2018-10-05T12:39:18Z

[Term]
id: PHIPO:0000291
name: colour absent
namespace: host_phenotype
is_a: PHIPO:0000285 ! abnormal colour
created_by: alaynecuzick
creation_date: 2018-10-05T12:39:26Z

[Term]
id: PHIPO:0000292
name: host motility phenotype
namespace: host_phenotype
comment: think about motility AND mobility
is_a: PHIPO:0000003 ! host phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T12:43:16Z

[Term]
id: PHIPO:0000293
name: immune response phenotype
namespace: host_phenotype
comment: should this be here in host phenotype or in PHI? \na host gene mutation may alter a immune reponse (turn on or off) in the absence of the pathogen. should this be captured in the conditions in similar manner to pathogen penetration phenotypes. Or should it be duplicated in PHI with different prefixes 'host' and 'PHI'?
is_a: PHIPO:0000003 ! host phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T12:48:26Z

[Term]
id: PHIPO:0000294
name: preformed structure and chemical barrier phenotype
namespace: host_phenotype
is_a: PHIPO:0000003 ! host phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T12:52:54Z

[Term]
id: PHIPO:0000295
name: host chemical target phenotype
namespace: host_phenotype
is_a: PHIPO:0000003 ! host phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T12:53:20Z

[Term]
id: PHIPO:0000296
name: normal dissemination of pathogen asexual product
namespace: pathogen_phenotype
is_a: PHIPO:0000045 ! normal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-10-05T12:56:56Z

[Term]
id: PHIPO:0000297
name: normal dissemination of pathogen sexual product
namespace: pathogen_phenotype
is_a: PHIPO:0000046 ! normal sexual reproduction
created_by: alaynecuzick
creation_date: 2018-10-05T12:57:37Z

[Term]
id: PHIPO:0000298
name: abnormal dissemination of pathogen asexual product
namespace: pathogen_phenotype
is_a: PHIPO:0000047 ! abnormal asexual reproduction
created_by: alaynecuzick
creation_date: 2018-10-05T12:58:29Z

[Term]
id: PHIPO:0000299
name: abnormal dissemination of pathogen sexual product
namespace: pathogen_phenotype
is_a: PHIPO:0000048 ! abnormal sexual reproduction
created_by: alaynecuzick
creation_date: 2018-10-05T12:58:58Z

[Term]
id: PHIPO:0000300
name: abnormal dissemination of host asexual product
namespace: host_phenotype
is_a: PHIPO:0000275 ! abnormal host reproductive phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T13:00:13Z

[Term]
id: PHIPO:0000301
name: normal dissemination of host asexual product
namespace: host_phenotype
is_a: PHIPO:0000276 ! normal host reproductive phenotpye
created_by: alaynecuzick
creation_date: 2018-10-05T13:00:21Z

[Term]
id: PHIPO:0000302
name: normal dissemination of host sexual product
namespace: host_phenotype
is_a: PHIPO:0000276 ! normal host reproductive phenotpye
created_by: alaynecuzick
creation_date: 2018-10-05T13:00:34Z

[Term]
id: PHIPO:0000303
name: abnormal dissemination of host sexual product
namespace: host_phenotype
is_a: PHIPO:0000275 ! abnormal host reproductive phenotype
created_by: alaynecuzick
creation_date: 2018-10-05T13:00:37Z

[Term]
id: PHIPO:0000305
name: effector of pathogenicity phenotype
namespace: pathogen_host_interaction_phenotype
def: "(Required for successful infection of the host species). The ability of an organism to activate or suppress host defences to enable infectious disease. (Irrespective of the host genotype)." []
is_a: PHIPO:0000280 ! effector phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T12:55:58Z

[Term]
id: PHIPO:0000306
name: abnormal effector of virulence phenotype
namespace: pathogen_host_interaction_phenotype
def: "The host defences activated by the pathogen are altered compared to the wild type interaction" []
is_a: PHIPO:0000311 ! effector of virulence phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T12:56:08Z

[Term]
id: PHIPO:0000307
name: normal effector of pathogenicity phenotype
namespace: pathogen_host_interaction_phenotype
def: "The ability to cause disease by activating or suppressing host defences is unaltered compared to the wildtype interaction. This may result in the outcome of being pathogenic or not-pathogenic." []
is_a: PHIPO:0000305 ! effector of pathogenicity phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T12:58:41Z

[Term]
id: PHIPO:0000308
name: normal effector of pathogenicity activation of host defence
namespace: pathogen_host_interaction_phenotype
def: "The host defences activated by the pathogen are unaltered compared to the wild type interaction" []
is_a: PHIPO:0000307 ! normal effector of pathogenicity phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T12:59:50Z

[Term]
id: PHIPO:0000309
name: normal effector of pathogenicity suppression of host defence
namespace: pathogen_host_interaction_phenotype
def: "The host defences suppressed by the pathogen are unaltered compared to the wild type interaction" []
is_a: PHIPO:0000307 ! normal effector of pathogenicity phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T13:11:15Z

[Term]
id: PHIPO:0000310
name: normal effector of virulence phenotype
namespace: pathogen_host_interaction_phenotype
def: "The pathogen has the ability to cause infectious disease dependent upon the gene for gene relationship between the pathogen and host genotype and this is unaltered compared to the wildtype interaction. This may result in disease (virulence) or no disease (avirulence)." []
is_a: PHIPO:0000311 ! effector of virulence phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T13:12:40Z

[Term]
id: PHIPO:0000311
name: effector of virulence phenotype
namespace: pathogen_host_interaction_phenotype
def: "(gene for gene relationships) or defined from the phenotype described in the published study.\nThe pathogen has the ability to cause infectious disease dependent upon the gene for gene relationship between the pathogen and host genotype." []
is_a: PHIPO:0000280 ! effector phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T13:14:06Z

[Term]
id: PHIPO:0000312
name: abnormal effector of pathogenicity phenotype
namespace: pathogen_host_interaction_phenotype
def: "The ability to cause disease by activating or suppressing host defences is altered compared to the wildtype interaction." []
is_a: PHIPO:0000305 ! effector of pathogenicity phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T13:15:10Z

[Term]
id: PHIPO:0000313
name: normal effector of virulence activation of host defence
namespace: pathogen_host_interaction_phenotype
def: "The host defences activated by the pathogen are unaltered compared to the wild type interaction" []
is_a: PHIPO:0000310 ! normal effector of virulence phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T13:22:08Z

[Term]
id: PHIPO:0000314
name: normal effector of virulence suppression of host defence
namespace: pathogen_host_interaction_phenotype
def: "The host defences suppressed by the pathogen are unaltered compared to the wild type interaction" []
is_a: PHIPO:0000310 ! normal effector of virulence phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T13:22:20Z

[Term]
id: PHIPO:0000315
name: abnormal effector of virulence activation of host defence
namespace: pathogen_host_interaction_phenotype
def: "The pathogen has the ability to cause infectious disease dependent upon the gene for gene relationship between the pathogen and host genotype and this is altered compared to the wildtype interaction. This may result in disease (virulence) or no disease (avirulence)." []
is_a: PHIPO:0000306 ! abnormal effector of virulence phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T13:25:51Z

[Term]
id: PHIPO:0000316
name: decreased effector of virulence activation of host defence
namespace: pathogen_host_interaction_phenotype
def: "The pathogen effector entity has a decreased ability to activate host defence." []
is_a: PHIPO:0000315 ! abnormal effector of virulence activation of host defence
created_by: alaynecuzick
creation_date: 2018-10-18T13:26:40Z

[Term]
id: PHIPO:0000317
name: increased effector of virulence activation of host defence
namespace: pathogen_host_interaction_phenotype
def: "The pathogen effector entity has an increased ability to activate host defence." []
is_a: PHIPO:0000315 ! abnormal effector of virulence activation of host defence
created_by: alaynecuzick
creation_date: 2018-10-18T13:27:34Z

[Term]
id: PHIPO:0000318
name: abnormal effector of virulence suppression of host defence
namespace: pathogen_host_interaction_phenotype
def: "The host defences suppressed by the pathogen are altered compare to the wild type interaction" []
is_a: PHIPO:0000306 ! abnormal effector of virulence phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T13:28:11Z

[Term]
id: PHIPO:0000319
name: decreased effector of virulence suppression of host defence
namespace: pathogen_host_interaction_phenotype
def: "The pathogen effector entity has a decreased ability to suppress host defence." []
is_a: PHIPO:0000318 ! abnormal effector of virulence suppression of host defence
created_by: alaynecuzick
creation_date: 2018-10-18T13:28:53Z

[Term]
id: PHIPO:0000320
name: increased effector of virulence suppression of host defence
namespace: pathogen_host_interaction_phenotype
def: "The pathogen effector entity has an increased ability to suppress host defence." []
is_a: PHIPO:0000318 ! abnormal effector of virulence suppression of host defence
created_by: alaynecuzick
creation_date: 2018-10-18T13:29:31Z

[Term]
id: PHIPO:0000321
name: abnormal effector of pathogenicity activation of host defence
namespace: pathogen_host_interaction_phenotype
def: "The host defences activated by the pathogen are altered compared to the wild type interaction." []
is_a: PHIPO:0000312 ! abnormal effector of pathogenicity phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T13:31:28Z

[Term]
id: PHIPO:0000322
name: gain of effector of pathogenicity activation of host defence
namespace: pathogen_host_interaction_phenotype
def: "The pathogen effector entity has gained the ability to activate host defence." []
is_a: PHIPO:0000321 ! abnormal effector of pathogenicity activation of host defence
created_by: alaynecuzick
creation_date: 2018-10-18T13:32:29Z

[Term]
id: PHIPO:0000323
name: loss of effector of pathogenicity activation of host defence
namespace: pathogen_host_interaction_phenotype
def: "The pathogen effector entity has lost the ability to activate host defence." []
is_a: PHIPO:0000321 ! abnormal effector of pathogenicity activation of host defence
created_by: alaynecuzick
creation_date: 2018-10-18T13:32:51Z

[Term]
id: PHIPO:0000324
name: abnormal effector of pathogenicity suppression of host defence
namespace: pathogen_host_interaction_phenotype
def: "The host defences suppressed by the pathogen are altered compared to the wild type interaction" []
is_a: PHIPO:0000312 ! abnormal effector of pathogenicity phenotype
created_by: alaynecuzick
creation_date: 2018-10-18T13:33:53Z

[Term]
id: PHIPO:0000325
name: gain of effector of pathogenicity suppression of host defence
namespace: pathogen_host_interaction_phenotype
def: "The pathogen effector entity has gained the ability to suppress host defence." []
is_a: PHIPO:0000324 ! abnormal effector of pathogenicity suppression of host defence
created_by: alaynecuzick
creation_date: 2018-10-18T13:34:13Z

[Term]
id: PHIPO:0000326
name: loss of effector of pathogenicity suppression of host defence
namespace: pathogen_host_interaction_phenotype
def: "The pathogen effector entity has lost the ability to suppress host defence." []
is_a: PHIPO:0000324 ! abnormal effector of pathogenicity suppression of host defence
created_by: alaynecuzick
creation_date: 2018-10-18T13:34:33Z

[Term]
id: PHIPO:0000327
name: increased resistance to cyproconazole
namespace: pathogen_phenotype
is_a: PHIPO:0000022 ! increased resistance to chemical
intersection_of: PATO:0001650
intersection_of: RO:0000052 IDO:0000528
intersection_of: towards CHEBI:81758
relationship: towards CHEBI:81758
created_by: alaynecuzick
creation_date: 2018-10-19T13:41:59Z

[Term]
id: PHIPO:0000328
name: normal resistance to cyproconazole
namespace: pathogen_phenotype
is_a: PHIPO:0000035 ! normal resistance to chemical
intersection_of: PATO:0045047
intersection_of: RO:0000052 IDO:0000528
intersection_of: towards CHEBI:81758
relationship: towards CHEBI:81758
created_by: alaynecuzick
creation_date: 2018-10-19T13:42:19Z

[Term]
id: PHIPO:0000329
name: increased sensitivity to cyproconazole
namespace: pathogen_phenotype
is_a: PHIPO:0000021 ! increased sensitivity to chemical
intersection_of: PATO:0001549
intersection_of: RO:0000052 IDO:0000528
intersection_of: towards CHEBI:81758
relationship: towards CHEBI:81758
created_by: alaynecuzick
creation_date: 2018-10-19T13:42:46Z

[Term]
id: PHIPO:0000330
name: normal sensitivity to cyproconazole
namespace: pathogen_phenotype
is_a: PHIPO:0000018 ! normal sensitivity to chemical
intersection_of: PATO:0045049
intersection_of: RO:0000052 IDO:0000528
intersection_of: towards CHEBI:81758
relationship: towards CHEBI:81758
created_by: alaynecuzick
creation_date: 2018-10-19T13:43:13Z

[Term]
id: PHIPO:0000331
name: penetration of host by pathogen phenotype
namespace: pathogen_host_interaction_phenotype
comment: add duplicate children from pathogen phenotypes. Alter to be in host assay
is_a: PHIPO:0000001 ! pathogen host interaction phenotype
created_by: alaynecuzick
creation_date: 2018-10-29T15:59:22Z

[Term]
id: PHIPO:0000332
name: pathogen growth in host phenotype
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000001 ! pathogen host interaction phenotype
created_by: alaynecuzick
creation_date: 2018-10-29T16:06:31Z

[Term]
id: PHIPO:0000333
name: pathogen cell to cell movement in host phenotype
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000336 ! intracellular
created_by: alaynecuzick
creation_date: 2018-10-29T16:08:18Z

[Term]
id: PHIPO:0000334
name: abnormal cell to cell movement
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000333 ! pathogen cell to cell movement in host phenotype
created_by: alaynecuzick
creation_date: 2018-10-29T16:09:56Z

[Term]
id: PHIPO:0000335
name: normal cell to cell movement
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000333 ! pathogen cell to cell movement in host phenotype
created_by: alaynecuzick
creation_date: 2018-10-29T16:10:17Z

[Term]
id: PHIPO:0000336
name: intracellular
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000332 ! pathogen growth in host phenotype
created_by: alaynecuzick
creation_date: 2018-10-29T16:16:46Z

[Term]
id: PHIPO:0000337
name: extracellular
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000332 ! pathogen growth in host phenotype
created_by: alaynecuzick
creation_date: 2018-10-29T16:17:02Z

[Term]
id: PHIPO:0000338
name: increased cell to cell movement
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000334 ! abnormal cell to cell movement
created_by: alaynecuzick
creation_date: 2018-10-29T16:17:55Z

[Term]
id: PHIPO:0000339
name: decreased cell to cell movement
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000334 ! abnormal cell to cell movement
created_by: alaynecuzick
creation_date: 2018-10-29T16:18:09Z

[Term]
id: PHIPO:0000340
name: abolished cell to cell movement
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000334 ! abnormal cell to cell movement
created_by: alaynecuzick
creation_date: 2018-10-29T16:18:22Z

[Term]
id: PHIPO:0000341
name: gain of cell to cell movement
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000334 ! abnormal cell to cell movement
created_by: alaynecuzick
creation_date: 2018-10-29T16:18:44Z

[Term]
id: PHIPO:0000342
name: expedited cell to cell movement
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000334 ! abnormal cell to cell movement
created_by: alaynecuzick
creation_date: 2018-10-29T16:19:03Z

[Term]
id: PHIPO:0000343
name: delayed cell to cell movement
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000334 ! abnormal cell to cell movement
created_by: alaynecuzick
creation_date: 2018-10-29T16:19:20Z

[Term]
id: PHIPO:0000344
name: host defence response to pathogen phenotype
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000001 ! pathogen host interaction phenotype
created_by: alaynecuzick
creation_date: 2018-10-29T16:23:29Z

[Term]
id: PHIPO:0000345
name: pathogen induced disease symptons in host phenotype
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000001 ! pathogen host interaction phenotype
created_by: alaynecuzick
creation_date: 2018-10-29T16:32:47Z

[Term]
id: PHIPO:0000346
name: lesion
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000347 ! colour
created_by: alaynecuzick
creation_date: 2018-10-29T16:33:27Z

[Term]
id: PHIPO:0000347
name: colour
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000345 ! pathogen induced disease symptons in host phenotype
created_by: alaynecuzick
creation_date: 2018-10-29T16:34:09Z

[Term]
id: PHIPO:0000348
name: deposition of substance
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000344 ! host defence response to pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-10-29T17:04:57Z

[Term]
id: PHIPO:0000349
name: abnormal penetration of host by pathogen phenotype
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000331 ! penetration of host by pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-11-05T13:23:08Z

[Term]
id: PHIPO:0000350
name: normal penetration of host by pathogen phenotype
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000331 ! penetration of host by pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-11-05T13:23:33Z

[Term]
id: PHIPO:0000351
name: abnormal pre penetration of host by pathogen
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000349 ! abnormal penetration of host by pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-11-05T13:24:13Z

[Term]
id: PHIPO:0000352
name: normal pre penetration of host by pathogen
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000350 ! normal penetration of host by pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-11-05T13:24:42Z

[Term]
id: PHIPO:0000353
name: normal penetration of host by pathogen
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000350 ! normal penetration of host by pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-11-05T13:25:01Z

[Term]
id: PHIPO:0000354
name: normal post penetration of host by pathogen
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000350 ! normal penetration of host by pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-11-05T13:25:33Z

[Term]
id: PHIPO:0000355
name: abnormal post penetration of host by pathogen
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000349 ! abnormal penetration of host by pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-11-05T13:26:18Z

[Term]
id: PHIPO:0000356
name: abnormal penetration of host by pathogen
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000349 ! abnormal penetration of host by pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-11-05T13:26:35Z

[Term]
id: PHIPO:0000357
name: altered functionality of pathogen penetration structure in contact with host
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000356 ! abnormal penetration of host by pathogen
created_by: alaynecuzick
creation_date: 2018-11-05T13:28:51Z

[Term]
id: PHIPO:0000358
name: non-functional pathogen penetration structure in contact with host
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000356 ! abnormal penetration of host by pathogen
created_by: alaynecuzick
creation_date: 2018-11-05T13:30:29Z

[Term]
id: PHIPO:0000359
name: decreased pathogen penetration across the host barrier
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000357 ! altered functionality of pathogen penetration structure in contact with host
created_by: alaynecuzick
creation_date: 2018-11-05T13:31:26Z

[Term]
id: PHIPO:0000360
name: increased pathogen penetration across the host barrier
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000357 ! altered functionality of pathogen penetration structure in contact with host
created_by: alaynecuzick
creation_date: 2018-11-05T13:32:32Z

[Term]
id: PHIPO:0000361
name: delayed pathogen penetration across the host barrier
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000357 ! altered functionality of pathogen penetration structure in contact with host
created_by: alaynecuzick
creation_date: 2018-11-05T13:32:57Z

[Term]
id: PHIPO:0000362
name: expedited pathogen penetration across the host barrier
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000357 ! altered functionality of pathogen penetration structure in contact with host
created_by: alaynecuzick
creation_date: 2018-11-05T13:33:34Z

[Term]
id: PHIPO:0000363
name: absent pathogen growth in host post penetration
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000355 ! abnormal post penetration of host by pathogen
created_by: alaynecuzick
creation_date: 2018-11-05T13:35:05Z

[Term]
id: PHIPO:0000364
name: abnormal pathogen growth in host post penetration present
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000355 ! abnormal post penetration of host by pathogen
created_by: alaynecuzick
creation_date: 2018-11-05T13:37:31Z

[Term]
id: PHIPO:0000365
name: decreased pathogen growth in host post penetration
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000364 ! abnormal pathogen growth in host post penetration present
created_by: alaynecuzick
creation_date: 2018-11-05T13:39:00Z

[Term]
id: PHIPO:0000366
name: delayed timing of pathogen growth in host post penetration
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000364 ! abnormal pathogen growth in host post penetration present
created_by: alaynecuzick
creation_date: 2018-11-05T13:39:34Z

[Term]
id: PHIPO:0000367
name: expedited timing of pathogen growth in host post penetration
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000364 ! abnormal pathogen growth in host post penetration present
created_by: alaynecuzick
creation_date: 2018-11-05T13:40:14Z

[Term]
id: PHIPO:0000368
name: increased pathogen growth in host post penetration
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000364 ! abnormal pathogen growth in host post penetration present
created_by: alaynecuzick
creation_date: 2018-11-05T13:41:05Z

[Term]
id: PHIPO:0000369
name: abnormal pathogen penetration structure present when near host
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000351 ! abnormal pre penetration of host by pathogen
created_by: alaynecuzick
creation_date: 2018-11-08T12:12:18Z

[Term]
id: PHIPO:0000370
name: pathogen penetration structure absent when near host
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000351 ! abnormal pre penetration of host by pathogen
created_by: alaynecuzick
creation_date: 2018-11-08T12:14:10Z

[Term]
id: PHIPO:0000371
name: decreased quantity of pathogen penetration structure when near host
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000369 ! abnormal pathogen penetration structure present when near host
created_by: alaynecuzick
creation_date: 2018-11-08T12:15:52Z

[Term]
id: PHIPO:0000372
name: decreased size of pathogen penetration structure when near host
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000369 ! abnormal pathogen penetration structure present when near host
created_by: alaynecuzick
creation_date: 2018-11-08T12:16:29Z

[Term]
id: PHIPO:0000373
name: increased quantity of pathogen penetration structure when near host
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000369 ! abnormal pathogen penetration structure present when near host
created_by: alaynecuzick
creation_date: 2018-11-08T12:16:46Z

[Term]
id: PHIPO:0000374
name: increased size of pathogen penetration structure when near host
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000369 ! abnormal pathogen penetration structure present when near host
created_by: alaynecuzick
creation_date: 2018-11-08T12:17:03Z

[Term]
id: PHIPO:0000375
name: delayed timing of pathogen penetration structure development when near host
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000369 ! abnormal pathogen penetration structure present when near host
created_by: alaynecuzick
creation_date: 2018-11-08T12:17:35Z

[Term]
id: PHIPO:0000376
name: expedited timing of pathogen penetration structure development when near host
namespace: pathogen_host_interaction_phenotype
is_a: PHIPO:0000369 ! abnormal pathogen penetration structure present when near host
created_by: alaynecuzick
creation_date: 2018-11-08T12:17:52Z

[Term]
id: Subset
is_a: IAO:0000102

[Typedef]
id: PHIPO:0000304
name: qualifier
comment: Used in FYPO as described in PATO best practices; placeholder relation to indicate normality/abnormality.\n\nwhich namespace? do we need all 3 triplicated again?
created_by: alaynecuzick
creation_date: 2018-10-12T13:24:02Z