diff --git a/docs/usage.md b/docs/usage.md index 2d7a9ed..50c6fe0 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -110,10 +110,17 @@ Let's assume you have Then with +Linux: ```shell VARVAMP_CONFIG=custom_config.py varvamp qpcr input_alignment.fasta my_results ``` +Windows: +```shell +set "VARVAMP_CONFIG=custom_config.py" +varvamp qpcr input_alignment.fasta my_results +``` + you run the command with the parameter change applied. If, as another example, you have several custom config files, each optimized for a specific use case, stored in a folder `/home/me/my varvamp configs`, you might want to run: