From bc1a3e9df07a0949dcf748e684e44b2d5b62e021 Mon Sep 17 00:00:00 2001
From: "K. Joeri van der Velde" <joeriv@gmail.com>
Date: Mon, 15 Jan 2018 15:27:45 +0100
Subject: [PATCH] Added run.sh and thesis.tex

---
 run.sh     |  6 ++++++
 thesis.tex | 48 ++++++++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 54 insertions(+)
 create mode 100755 run.sh
 create mode 100644 thesis.tex

diff --git a/run.sh b/run.sh
new file mode 100755
index 0000000..3240dfe
--- /dev/null
+++ b/run.sh
@@ -0,0 +1,6 @@
+latex thesis.tex
+bibtex thesis
+latex thesis.tex
+latex thesis.tex
+dvips -t a5 thesis.dvi
+ps2pdf thesis.ps 
diff --git a/thesis.tex b/thesis.tex
new file mode 100644
index 0000000..e3f4b11
--- /dev/null
+++ b/thesis.tex
@@ -0,0 +1,48 @@
+\documentclass[10pt]{book}
+\usepackage[a5paper]{geometry}
+\usepackage{mathpazo} % font style
+\linespread{1.05} % Palatino needs more leading (space between lines)
+\renewcommand{\familydefault}{\sfdefault}
+\input{usepackages.tex} % load required packages
+\raggedbottom % prevent spreading out paragraphs with lots of whitespace inbetween
+
+\begin{document}
+
+\pagestyle{empty}
+
+\input{cover.tex}
+
+\setcounter{page}{1}
+
+\input{preamble.tex}
+
+\tableofcontents
+
+\pagestyle{fancy}
+\fancyhf{}
+\fancyhead[LE]{\leftmark}
+\fancyhead[RO]{\rightmark}
+\fancyfoot[LE,RO]{\thepage}
+
+\input{introduction.tex}
+\input{xgap.tex}
+\input{xqtl.tex}
+\input{wormqtl.tex}
+\input{caddmmr.tex}
+\input{gavin.tex}
+\input{frameworkforgenomics.tex}
+\input{discussion.tex}
+
+\bibliographystyle{plain}
+
+\cleardoublepage
+\leftwatermark{}\rightwatermark{} % stop printing the thumb indexes
+\phantomsection\bibliography{references}{}
+\cleardoublepage\phantomsection\listoftables
+\cleardoublepage\phantomsection\listoffigures
+
+\input{appendix.tex}
+
+\input{back.tex}
+
+\end{document}