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Non-recombinant: XBE #351

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szhan opened this issue Feb 25, 2025 · 0 comments
Open

Non-recombinant: XBE #351

szhan opened this issue Feb 25, 2025 · 0 comments

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@szhan
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szhan commented Feb 25, 2025 •
edited by jeromekelleher
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cov-lineages/pango-designation#1246

ktmeaton/ncov-recombinant#177

Below is info collated from the pango-designation issues by the RecombinHunt authors.

It is detected a recombinant by RecombinHunt-GISAID and RecombinHunt-Nextstrain.

method left_parent right_parent left_breakpoint right_breakpoint
pango-designation BA.5.2* BE.4.1 22591 23609
RecombinHunt-GISAID BA.5.2.6 BE.4 26719 26720
RecombinHunt-Nextstrain BA.5.2.6 BE.4.1.1 26719 26720

Discussion started in #285.

Quoting Yan: "No clear recombination, and no reversions etc on the nearby branches. Unless there is a deletion we are missing, I suppose."

Copying image from Yan.
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@szhan