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Non-recombinant: XBK #350

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szhan opened this issue Feb 25, 2025 · 0 comments
Open

Non-recombinant: XBK #350

szhan opened this issue Feb 25, 2025 · 0 comments

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szhan commented Feb 25, 2025 •
edited by jeromekelleher
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cov-lineages/pango-designation#1418

ktmeaton/ncov-recombinant#213

Below is info collated from the pango-designation issues by the RecombinHunt authors.

It is detected a recombinant by RecombinHunt-GISAID and RecombinHunt-Nextstrain.

method left_parent right_parent left_breakpoint right_breakpoint
pango-designation BA.5.2 CJ.1 - -
RecombinHunt-GISAID BF.5.2 CJ.1 1629 1630
RecombinHunt-Nextstrain BA.5.2.10 CJ.1.1 1638 1639

N.B. RecombinHunt authors noted the breakpoint intervals are unclear.

Discussion started in #285.

Quoting Yan: "No clear recombination, and no reversions etc on the nearby branches. Unless there is a deletion we are missing, I suppose."

Copying image from Yan. It seems like a sibling to XBQ.

Image
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