Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased - ReleaseDate

0.2.0 - 2020-11-17

Added

command convert-abundance
command combine-abundance

Modified

fixed README typos

0.1.2 - 2020-10-29

Added

command combine-trees
- read multiple Kraken reports
- write one Newick taxonomy tree
second example Kraken report to test combining trees

Modified

changed tree to convert-tree
- read only one file
- write only one file (default: stdout)
dev: split codebase between libspideog (src/lib.rs) and spideog (src/main.rs)
dev: other refactoring and improvements of the codebase

0.1.1 - 2020-10-24

Added

dev: continous integration builds for linux, osx, and windows
error: add spantrace
documentation: example kraken report and output
documentation: links to downloads

Modified

bugfix: quotes and round brackets were added to the list of characters to escape in taxon name
refactor: started to refactor to facilitate unit testing

0.1.0 - 2020-10-19

Added

command tree to convert the taxonomy tree from Kraken reports to newick format