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IDPcentral Scripts, Data, and Notebooks

This repository contains the scripts to generate the IDPcentral Knowledge Graph based on data harvested from DisProt, MobiDB, and ProteinEnsemble (PED).

The starting point for this repository were the files developed during the ELIXIR sponsored BioHackathon-Europe 2020. That work was reported in BioHackrXiv v3jct. This repo updates the scripts for the revised deployments, and scales the work to the entire content of the three sites.

Notes

  • The term 'source' is used to distinguish the page that was scraped
  • The term 'dataset' is used to identify the collection of data that a particular record page (e.g. disprot:DP000003) belongs to

Analysis Notebook

The notebook for exploring the generated knowledge graph can be run on the cloud using the mybinder service1; click on logo below to get going.

Binder

Footnotes

  1. See this tutorial for an overview of what MyBinder is and offers. ↩