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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(compAgree)
export(compClinvar)
export(compDrugsen)
export(compFGA)
export(compMut)
export(compSurv)
export(compTMB)
export(getCIMLR)
export(getCOCA)
export(getClustNum)
export(getConsensusClustering)
export(getConsensusMOIC)
export(getElites)
export(getIntNMF)
export(getLRAcluster)
export(getMOIC)
export(getMoCluster)
export(getMoHeatmap)
export(getNEMO)
export(getPINSPlus)
export(getSNF)
export(getSilhouette)
export(getStdiz)
export(getiClusterBayes)
export(runDEA)
export(runGSEA)
export(runGSVA)
export(runKappa)
export(runMarker)
export(runNTP)
export(runPAM)
export(twoclassdeseq2)
export(twoclassedger)
export(twoclasslimma)
import(CIMLR)
import(ConsensusClusterPlus)
import(IntNMF)
import(PINSPlus)
import(SNFtool)
import(cluster)
import(coca)
import(ggalluvial)
import(ggplot2)
import(iClusterPlus)
import(mogsa)
import(patchwork)
import(ridge)
import(survival)
import(survminer)
import(sva)
importFrom(CMScaller,ntp)
importFrom(CMScaller,subHeatmap)
importFrom(ClassDiscovery,distanceMatrix)
importFrom(ComplexHeatmap,"%v%")
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,anno_mark)
importFrom(ComplexHeatmap,draw)
importFrom(ComplexHeatmap,ht_opt)
importFrom(ComplexHeatmap,oncoPrint)
importFrom(ComplexHeatmap,pheatmap)
importFrom(ComplexHeatmap,rowAnnotation)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,results)
importFrom(GSVA,gsva)
importFrom(PINSPlus,PerturbationClustering)
importFrom(aricode,AMI)
importFrom(aricode,ARI)
importFrom(car,powerTransform)
importFrom(circlize,colorRamp2)
importFrom(clusterProfiler,GSEA)
importFrom(clusterProfiler,read.gmt)
importFrom(clusterRepro,IGP.clusterRepro)
importFrom(cowplot,plot_grid)
importFrom(dplyr,"%>%")
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(dplyr,tally)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,glmFit)
importFrom(edgeR,glmLRT)
importFrom(edgeR,topTags)
importFrom(flexclust,comPart)
importFrom(genefilter,rowttests)
importFrom(ggalluvial,StatStratum)
importFrom(ggplot2,alpha)
importFrom(ggpp,geom_table)
importFrom(ggpubr,stat_compare_means)
importFrom(grDevices,colorRamp)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.copy2pdf)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,pdf.options)
importFrom(grid,gpar)
importFrom(grid,grid.rect)
importFrom(impute,impute.knn)
importFrom(jstable,CreateTableOne2)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,topTable)
importFrom(maftools,read.maf)
importFrom(maftools,titv)
importFrom(officer,body_add_par)
importFrom(officer,body_add_table)
importFrom(officer,read_docx)
importFrom(pamr,pamr.train)
importFrom(preprocessCore,normalize.quantiles)
importFrom(reshape2,melt)
importFrom(sva,ComBat)
importFrom(tibble,tibble)
importFrom(vegan,vegdist)