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Create dataflow to publish alienspecies cubes on ZENODO #270

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SanderDevisscher opened this issue Nov 5, 2024 · 3 comments
Open

Create dataflow to publish alienspecies cubes on ZENODO #270

SanderDevisscher opened this issue Nov 5, 2024 · 3 comments

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@SanderDevisscher
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The cubes will be downloaded monthly by the get_occ_cube github action (after #18).
Since this information would be interesting for other researchers (in and outside of INBO) we should publish the cube to ZENODO.

@damianooldoni we should plan a meet to determine the best way to achieve this.

@SanderDevisscher
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SanderDevisscher commented Nov 12, 2024

A new workflow should be created to update eu_alientaxacube on Zenodo. It should be triggered when the get_occ_cube - workflow is completed successfully. This new workflow will run in parallel with the cube preprocessing - workflow.

Todo:

  • add logic to log download doi's to get_occ_cube flow
  • @damianooldoni adds a access token to this repo's secrets
  • use deposits to update eu_alientaxacube on zenodo

Taxon metadata is not yet included in b-cubed flow see gbif/occurrence-cube#9 for updates

@SanderDevisscher
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@damianooldoni can you provide a link to the zenodo dataset to be updated ?

@damianooldoni
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