You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
To reflect correct PCAWG datasets associated publication, data files belonging to PCAWG excluded donors should not be indexed. Previous issue: icgc-dcc/dcc-portal#524
Switching to the new JSONL should get us the desired index.
This needs to be tested thoroughly, there could be unintended side affect when some PCAWG donors removed from the JSONL. The DCC Bioinfo team can help with testing and investigating if things break unexpectedly.
The text was updated successfully, but these errors were encountered:
To reflect correct PCAWG datasets associated publication, data files belonging to PCAWG excluded donors should not be indexed. Previous issue: icgc-dcc/dcc-portal#524
The repository indexer currently uses a JSONL file to retrieve PCAWG metadata information, this file is pulled from http://pancancer.info/data_releases/latest/release_may2016.v1.4.with_consensus_calls.jsonl
The DCC bioinfo team has created a new JSONL file with PCAWG excluded donors removed: http://pancancer.info/data_releases/latest/release_may2016.v1.4.with_consensus_calls.excluded_donors_removed.jsonl
Switching to the new JSONL should get us the desired index.
This needs to be tested thoroughly, there could be unintended side affect when some PCAWG donors removed from the JSONL. The DCC Bioinfo team can help with testing and investigating if things break unexpectedly.
The text was updated successfully, but these errors were encountered: