rna-seq-star-gex.svg

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<!-- 1 -->
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<title>1</title>
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<!-- 1&#45;&gt;0 -->
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<title>1&#45;&gt;0</title>
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<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
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<!-- 2&#45;&gt;1 -->
<g id="edge5" class="edge">
<title>2&#45;&gt;1</title>
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<!-- 15 -->
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<title>15</title>
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<!-- 2&#45;&gt;15 -->
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<title>2&#45;&gt;15</title>
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<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
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<!-- 2&#45;&gt;16 -->
<g id="edge26" class="edge">
<title>2&#45;&gt;16</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="190.24,-262.46 192.49,-252.1 184.28,-258.79 190.24,-262.46"/>
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<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
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<!-- 2&#45;&gt;18 -->
<g id="edge29" class="edge">
<title>2&#45;&gt;18</title>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
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<text text-anchor="middle" x="206" y="-375.5" font-family="sans" font-size="10.00">star_count_matrix</text>
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<!-- 3&#45;&gt;2 -->
<g id="edge7" class="edge">
<title>3&#45;&gt;2</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="179.66,-330.54 171.24,-324.1 173.81,-334.38 179.66,-330.54"/>
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<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
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<text text-anchor="middle" x="298" y="-519.5" font-family="sans" font-size="10.00">star_align_pass2</text>
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<!-- 4&#45;&gt;3 -->
<g id="edge9" class="edge">
<title>4&#45;&gt;3</title>
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<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
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<text text-anchor="middle" x="206" y="-447.5" font-family="sans" font-size="10.00">rseqc_infer_experiment</text>
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<!-- 4&#45;&gt;12 -->
<g id="edge21" class="edge">
<title>4&#45;&gt;12</title>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
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<!-- 5&#45;&gt;4 -->
<g id="edge10" class="edge">
<title>5&#45;&gt;4</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="302.14,-550.15 298.4,-540.23 295.14,-550.31 302.14,-550.15"/>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
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<text text-anchor="middle" x="375" y="-663.5" font-family="sans" font-size="10.00">star_align_pass1</text>
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<!-- 5&#45;&gt;11 -->
<g id="edge17" class="edge">
<title>5&#45;&gt;11</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="352.68,-693.58 357.41,-684.1 347.8,-688.57 352.68,-693.58"/>
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<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
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<text text-anchor="middle" x="301" y="-807.5" font-family="sans" font-size="10.00">gencode_genome_seq</text>
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<!-- 6&#45;&gt;5 -->
<g id="edge14" class="edge">
<title>6&#45;&gt;5</title>
<path fill="none" stroke="grey" stroke-width="2" d="M301.49,-791.7C301.71,-783.98 301.98,-774.71 302.23,-766.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="305.72,-766.2 302.51,-756.1 298.73,-766 305.72,-766.2"/>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
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<text text-anchor="middle" x="187" y="-735.5" font-family="sans" font-size="10.00">gencode_genome_annot</text>
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<!-- 7&#45;&gt;4 -->
<g id="edge11" class="edge">
<title>7&#45;&gt;4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M195.9,-719.85C215.26,-682.52 261.33,-593.69 284.38,-549.26"/>
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<!-- 7&#45;&gt;11 -->
<g id="edge18" class="edge">
<title>7&#45;&gt;11</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="321.01,-690.84 329.16,-684.07 318.57,-684.28 321.01,-690.84"/>
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<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
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<text text-anchor="middle" x="187" y="-591.5" font-family="sans" font-size="10.00">gffutils_gtf2bed</text>
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<!-- 7&#45;&gt;13 -->
<g id="edge22" class="edge">
<title>7&#45;&gt;13</title>
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<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
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<text text-anchor="middle" x="114" y="-519.5" font-family="sans" font-size="10.00">gtf_gene_annot</text>
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<!-- 7&#45;&gt;14 -->
<g id="edge23" class="edge">
<title>7&#45;&gt;14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M178.18,-719.62C166.43,-695.85 145.65,-651.63 133,-612 126.52,-591.71 121.6,-568.12 118.39,-550.32"/>
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<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
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<text text-anchor="middle" x="458" y="-735.5" font-family="sans" font-size="10.00">bbmap_max_read_length</text>
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<!-- 8&#45;&gt;4 -->
<g id="edge13" class="edge">
<title>8&#45;&gt;4</title>
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<!-- 8&#45;&gt;11 -->
<g id="edge19" class="edge">
<title>8&#45;&gt;11</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="405.18,-687.88 395.28,-684.1 400.67,-693.23 405.18,-687.88"/>
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<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
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<text text-anchor="middle" x="460" y="-807.5" font-family="sans" font-size="10.00">bbmap_read_length_histogram</text>
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<!-- 9&#45;&gt;8 -->
<g id="edge15" class="edge">
<title>9&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M459.51,-791.7C459.29,-783.98 459.02,-774.71 458.77,-766.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="462.27,-766 458.49,-756.1 455.28,-766.2 462.27,-766"/>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
<path fill="none" stroke="#97d856" stroke-width="2" d="M418,-612C418,-612 338,-612 338,-612 332,-612 326,-606 326,-600 326,-600 326,-588 326,-588 326,-582 332,-576 338,-576 338,-576 418,-576 418,-576 424,-576 430,-582 430,-588 430,-588 430,-600 430,-600 430,-606 424,-612 418,-612"/>
<text text-anchor="middle" x="378" y="-591.5" font-family="sans" font-size="10.00">star_filter_pass1_sj</text>
</g>
<!-- 10&#45;&gt;4 -->
<g id="edge12" class="edge">
<title>10&#45;&gt;4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M358.22,-575.7C348.25,-566.97 335.99,-556.24 325.14,-546.75"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="327.38,-544.06 317.55,-540.1 322.77,-549.32 327.38,-544.06"/>
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<!-- 11&#45;&gt;10 -->
<g id="edge16" class="edge">
<title>11&#45;&gt;10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M375.74,-647.7C376.07,-639.98 376.47,-630.71 376.84,-622.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="380.34,-622.25 377.27,-612.1 373.34,-621.95 380.34,-622.25"/>
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<!-- 12&#45;&gt;3 -->
<g id="edge8" class="edge">
<title>12&#45;&gt;3</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="209.5,-406.1 206,-396.1 202.5,-406.1 209.5,-406.1"/>
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<!-- 13&#45;&gt;12 -->
<g id="edge20" class="edge">
<title>13&#45;&gt;12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M189.29,-575.87C192.53,-551.67 198.48,-507.21 202.33,-478.39"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="205.84,-478.57 203.7,-468.19 198.9,-477.64 205.84,-478.57"/>
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<!-- 14&#45;&gt;2 -->
<g id="edge6" class="edge">
<title>14&#45;&gt;2</title>
<path fill="none" stroke="grey" stroke-width="2" d="M117.35,-503.56C123.08,-473.97 135.29,-412.05 147,-360 148.9,-351.55 151.1,-342.38 153.15,-334.08"/>
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<!-- 15&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>15&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M116.65,-143.83C122.65,-125.83 132.56,-96.77 142,-72 145.32,-63.3 149.14,-53.89 152.67,-45.45"/>
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<!-- 16&#45;&gt;15 -->
<g id="edge24" class="edge">
<title>16&#45;&gt;15</title>
<path fill="none" stroke="grey" stroke-width="2" d="M180.26,-215.7C168.56,-206.8 154.14,-195.82 141.49,-186.2"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="143.56,-183.37 133.48,-180.1 139.32,-188.94 143.56,-183.37"/>
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<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
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<!-- 16&#45;&gt;17 -->
<g id="edge28" class="edge">
<title>16&#45;&gt;17</title>
<path fill="none" stroke="grey" stroke-width="2" d="M230.64,-215.88C245.42,-206.72 263.79,-195.34 279.7,-185.48"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="281.59,-188.43 288.25,-180.19 277.91,-182.48 281.59,-188.43"/>
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<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
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<!-- 16&#45;&gt;20 -->
<g id="edge31" class="edge">
<title>16&#45;&gt;20</title>
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<!-- 17&#45;&gt;0 -->
<g id="edge4" class="edge">
<title>17&#45;&gt;0</title>
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