diff --git a/404.html b/404.html index 463971a..74e7c21 100644 --- a/404.html +++ b/404.html @@ -18,7 +18,7 @@ - +
@@ -49,7 +49,7 @@
  • - +
    • @@ -60,7 +60,7 @@
    - +
    @@ -88,16 +88,16 @@

    Page not found (404)

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/LICENSE-text.html b/LICENSE-text.html index 15acad0..d9914a4 100644 --- a/LICENSE-text.html +++ b/LICENSE-text.html @@ -3,7 +3,7 @@ - +
    @@ -31,14 +31,14 @@
    - +
    @@ -94,15 +94,15 @@

    License

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/authors.html b/authors.html index dc9e466..21b6683 100644 --- a/authors.html +++ b/authors.html @@ -3,7 +3,7 @@ - +
    @@ -31,14 +31,14 @@
    - +
    @@ -47,29 +47,29 @@

    Authors and Citation

    - +

    Citation

    - Source: DESCRIPTION + Source: DESCRIPTION

    van Buuren S (2024). chartcatalog: Catalog of JAMES Growth Charts. -R package version 1.15.0, https://github.com/growthcharts/chartcatalog. +R package version 1.16.0, https://github.com/growthcharts/chartcatalog. 

    @Manual{,
   title = {chartcatalog: Catalog of JAMES Growth Charts},
   author = {Stef {van Buuren}},
   year = {2024},
-  note = {R package version 1.15.0},
+  note = {R package version 1.16.0},
   url = {https://github.com/growthcharts/chartcatalog},
 }
    @@ -84,15 +84,15 @@

    Citation

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/index.html b/index.html index f207c28..80e3852 100644 --- a/index.html +++ b/index.html @@ -19,7 +19,7 @@ - +
    @@ -50,7 +50,7 @@
  • - +
    • @@ -61,7 +61,7 @@
    - +
    @@ -311,16 +311,16 @@

    Dev status

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/news/index.html b/news/index.html index 5b94a5b..399100b 100644 --- a/news/index.html +++ b/news/index.html @@ -3,7 +3,7 @@ - +
    @@ -31,22 +31,26 @@
    - +

    Changelog

    - Source: NEWS.md + Source: NEWS.md
    +
    +

    chartcatalog 1.16.0

    +
    • Update to roxygen 7.3.2
      • +

    chartcatalog 1.15.0

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/pkgdown.yml b/pkgdown.yml index fd703bf..51700a3 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -1,6 +1,5 @@ pandoc: 3.1.11 -pkgdown: 2.0.9 +pkgdown: 2.1.1 pkgdown_sha: ~ articles: {} -last_built: 2024-05-08T11:50Z - +last_built: 2024-11-19T09:01Z diff --git a/reference/create_chartcode.html b/reference/create_chartcode.html index bc6af57..acdf6b6 100644 --- a/reference/create_chartcode.html +++ b/reference/create_chartcode.html @@ -3,7 +3,7 @@ - +
    @@ -31,20 +31,20 @@
    - +

    Construct a single chart code from user input

    - Source: R/create_chartcode.R + Source: R/create_chartcode.R
    @@ -67,42 +67,44 @@

    Construct a single chart code from user input

    Arguments

    -
    chartgrp
    + + +
    chartgrp

    The chart group: 'nl2010', 'preterm', 'who', 'gsed1' or 'gsed1pt'.

    -
    etn
    +
    etn

    Either 'nl', 'tu', 'ma', 'hs' or 'ds'. May also be abbreviates to a single letter.

    -
    sex
    +
    sex

    Either 'male' or 'female'

    -
    agegrp
    +
    agegrp

    Either '0-15m', '0-4y', '1-21y', '0-21y' or '0-4ya'. Age group '0-4ya' provides the 0-4 chart with weight for age (design E).

    -
    side
    +
    side

    Either 'front', 'back', '-hdc', 'both', 'hgt', 'wgt', 'hdc', 'bmi', 'wfh' or 'dsc'.

    -
    week
    +
    week

    A number between 25 and 36 gestational age (preterm) or 40 for term (default).

    -
    language
    +
    language

    Language: 'dutch' or 'english'

    -
    version
    +
    version

    Version number. Default is to have no version number.

    @@ -119,15 +121,15 @@

    Arguments

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/reference/get_breakpoints.html b/reference/get_breakpoints.html index c889f37..d4772ad 100644 --- a/reference/get_breakpoints.html +++ b/reference/get_breakpoints.html @@ -3,7 +3,7 @@ - +
    @@ -31,20 +31,20 @@
    - +

    Find table of break ages and labels

    - Source: R/get_breakpoints.R + Source: R/get_breakpoints.R
    @@ -58,17 +58,15 @@

    Find table of break ages and labels

    Arguments

    -
    dnr
    + + +
    dnr

    Name of donor dataset. May include "0-2", "2-4" and "4-18"

    Value

    - - -

    A data frame with three columns: visit, age and label

    - - +

    A data frame with three columns: visit, age and label

    Note

    @@ -105,15 +103,15 @@

    Examples

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/reference/get_chartgrp.html b/reference/get_chartgrp.html index 881d31f..c922dc7 100644 --- a/reference/get_chartgrp.html +++ b/reference/get_chartgrp.html @@ -3,7 +3,7 @@ - +
    @@ -31,20 +31,20 @@
    - +

    Obtain the chart group from the chartcode

    - Source: R/get_chartgrp.R + Source: R/get_chartgrp.R
    @@ -58,7 +58,9 @@

    Obtain the chart group from the chartcode

    Arguments

    -
    chartcode
    + + +
    chartcode

    Chart codes, usually constructed by create_chartcode(). If not specified, the function uses all chart codes.

    @@ -66,11 +68,8 @@

    Arguments

    Value

    - - -

    The function returns a named vector with

    -

    -

    length(chartcode) elements with the chart group names.

    +

    The function returns a named vector with + length(chartcode) elements with the chart group names.

    Details

    @@ -103,15 +102,15 @@

    Examples

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/reference/get_refcode.html b/reference/get_refcode.html index 0da80b5..b5f950e 100644 --- a/reference/get_refcode.html +++ b/reference/get_refcode.html @@ -3,7 +3,7 @@ - +
    @@ -31,20 +31,20 @@
    - +

    Obtain the name of the reference code used on a chart

    - Source: R/get_refcode.R + Source: R/get_refcode.R
    @@ -58,24 +58,24 @@

    Obtain the name of the reference code used on a chart

    Arguments

    -
    chartcode
    + + +
    chartcode

    The chart code, returned by create_chartcode()

    -
    yname
    +
    yname

    Name of the response variable

    -
    chartgrp
    +
    chartgrp

    The chart group. If not specified, it is calculated automatically.

    Value

    - - -

    get_refcode() returns a string.

    +

    get_refcode() returns a string.

    @@ -96,15 +96,15 @@

    Examples

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/reference/get_reference.html b/reference/get_reference.html index 70c18d5..3676990 100644 --- a/reference/get_reference.html +++ b/reference/get_reference.html @@ -4,7 +4,7 @@ - +
    @@ -32,20 +32,20 @@
    - +

    Obtain the growth reference behind the chart

    - Source: R/get_reference.R, R/get_reference_call.R + Source: R/get_reference.R, R/get_reference_call.R
    @@ -62,26 +62,24 @@

    Obtain the growth reference behind the chart

    Arguments

    -
    chartcode
    + + +
    chartcode

    The chart code, returned by create_chartcode()

    -
    yname
    +
    yname

    Name of the response variable

    -
    chartgrp
    +
    chartgrp

    The chart group. If not specified, it is calculated automatically.

    Value

    - - -

    get_reference() returns an object of class reference.

    - - +

    get_reference() returns an object of class reference.

    get_reference_call() returns a string with the call. Your library must contain the clopus package to execute the call by eval(parse(text = call)).

    @@ -93,9 +91,9 @@

    See also

    Examples

    - 
    if (FALSE) {
+    
    if (FALSE) { # \dontrun{
 ref <- get_reference("NJAA", "hgt")
-}
+} # }
 get_reference_call("NJAA", "hgt")
 #> [1] "clopus::nl2009[[\"nl2009.mhgtNL\"]]"
 
    
@@ -112,15 +110,15 @@ 
    Examples
    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/reference/get_seq.html b/reference/get_seq.html index e2eb8bc..aed0805 100644 --- a/reference/get_seq.html +++ b/reference/get_seq.html @@ -3,7 +3,7 @@ - +
    @@ -31,20 +31,20 @@
    - +

    Obtain the transformation sequence from a chartcode and yname

    - Source: R/get_seq.R + Source: R/get_seq.R
    @@ -58,27 +58,26 @@

    Obtain the transformation sequence from a chartcode and yname

    Arguments

    -
    chartcode
    + + +
    chartcode

    The chart code, returned by create_chartcode()

    -
    yname
    +
    yname

    Names of the response variable

    -
    chartgrp
    +
    chartgrp

    The chart group. If not specified, it is calculated automatically.

    Value

    - - -

    An string, either "tr" (transform-reference) or

    -

    -

    "rt" (reference-transform) specifying the transformation +

    An string, either "tr" (transform-reference) or + "rt" (reference-transform) specifying the transformation sequence.

    @@ -101,15 +100,15 @@

    Examples

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/reference/get_tx.html b/reference/get_tx.html index e86d1f9..27ca851 100644 --- a/reference/get_tx.html +++ b/reference/get_tx.html @@ -3,7 +3,7 @@ - +
    @@ -31,20 +31,20 @@
    - +

    Obtain the tx() transformation function

    - Source: R/get_tx.R + Source: R/get_tx.R
    @@ -58,26 +58,24 @@

    Obtain the tx() transformation function

    Arguments

    -
    chartcode
    + + +
    chartcode

    The chart code, returned by create_chartcode()

    -
    yname
    +
    yname

    Names of the response variable

    -
    chartgrp
    +
    chartgrp

    The chart group. If not specified, it is calculated automatically.

    Value

    - - -

    An function with one argument x

    - - +

    An function with one argument x

    @@ -85,7 +83,7 @@

    Examples

    get_tx("NJAA", "hgt", "nl2010")
 #> function (x) 
 #> x * 12
-#> <environment: 0x55b3bb5cadf8>
+#> <environment: 0x55fbb42bd698>
    @@ -100,15 +98,15 @@

    Examples

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/reference/get_ty.html b/reference/get_ty.html index da823ef..6e1b6bf 100644 --- a/reference/get_ty.html +++ b/reference/get_ty.html @@ -3,7 +3,7 @@ - +
    @@ -31,20 +31,20 @@
    - +

    Obtain the ty() transformation function

    - Source: R/get_ty.R + Source: R/get_ty.R
    @@ -58,26 +58,24 @@

    Obtain the ty() transformation function

    Arguments

    -
    chartcode
    + + +
    chartcode

    The chart code, returned by create_chartcode()

    -
    yname
    +
    yname

    Names of the response variable

    -
    chartgrp
    +
    chartgrp

    The chart group. If not specified, it is calculated automatically.

    Value

    - - -

    An function with one argument y

    - - +

    An function with one argument y

    @@ -99,15 +97,15 @@

    Examples

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/reference/get_viewport.html b/reference/get_viewport.html index fa9360c..3806947 100644 --- a/reference/get_viewport.html +++ b/reference/get_viewport.html @@ -3,7 +3,7 @@ - +
    @@ -31,20 +31,20 @@
    - +

    Obtain the viewport name of the chart

    - Source: R/get_viewport.R + Source: R/get_viewport.R
    @@ -63,29 +63,29 @@

    Obtain the viewport name of the chart

    Arguments

    -
    chartcode
    + + +
    chartcode

    The chart code, returned by create_chartcode()

    -
    yname
    +
    yname

    Names of the response variable

    -
    chartgrp
    +
    chartgrp

    The chart group. If not specified, it is calculated automatically.

    -
    number
    +
    number

    If number == TRUE the function return the viewport number. If number == FALSE the function return the viewport name.

    Value

    - - -

    Number, or name, of the viewport

    +

    Number, or name, of the viewport

    @@ -100,15 +100,15 @@

    Value

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/reference/get_ynames.html b/reference/get_ynames.html index 530749d..1c8b4fc 100644 --- a/reference/get_ynames.html +++ b/reference/get_ynames.html @@ -3,7 +3,7 @@ - +
    @@ -31,20 +31,20 @@
    - +

    Obtain response variables from a chartcode

    - Source: R/get_ynames.R + Source: R/get_ynames.R
    @@ -58,22 +58,22 @@

    Obtain response variables from a chartcode

    Arguments

    -
    chartcode
    + + +
    chartcode

    The chart code, returned by create_chartcode(). Can be a vector. If not specified, the function returns all names.

    -
    chartgrp
    +
    chartgrp

    The chart group. If not specified, it is calculated automatically.

    Value

    - - -

    A named vector with names of the response variables for

    +

    A named vector with names of the response variables for

    @@ -95,15 +95,15 @@

    Examples

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/reference/index.html b/reference/index.html index da0e76a..1091840 100644 --- a/reference/index.html +++ b/reference/index.html @@ -1,9 +1,9 @@ -Function reference • chartcatalogPackage index • chartcatalog - +
    @@ -31,14 +31,14 @@
    - +
    @@ -111,15 +111,15 @@

    All functions
    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/reference/parse_chartcode.html b/reference/parse_chartcode.html index 603e166..4eeea9a 100644 --- a/reference/parse_chartcode.html +++ b/reference/parse_chartcode.html @@ -3,7 +3,7 @@ - +
    @@ -31,20 +31,20 @@
    - +

    Parses the chart code

    - Source: R/parse_chartcode.R + Source: R/parse_chartcode.R
    @@ -58,15 +58,15 @@

    Parses the chart code

    Arguments

    -
    chartcode
    + + +
    chartcode

    the chart code, usually constructed by create_chartcode()

    Value

    - - -

    The function returns a list with the following components:

    population
    +

    The function returns a list with the following components:

    population

    A string identifying the population, e.g. 'NL','MA', 'TU' or 'PT'.

    @@ -93,7 +93,7 @@

    Value

    A scalar indicating the gestational age at birth. Only used if population == "PT".

    - +
    @@ -108,15 +108,15 @@

    Value

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/reference/ynames_lookup.html b/reference/ynames_lookup.html index b0f4506..fa23b9f 100644 --- a/reference/ynames_lookup.html +++ b/reference/ynames_lookup.html @@ -4,7 +4,7 @@ - +
    @@ -32,20 +32,20 @@
    - +

    Details of installed charts

    - Source: R/ynames_lookup.R + Source: R/ynames_lookup.R
    @@ -114,15 +114,15 @@

    Format

    -

    Site built with pkgdown 2.0.9.

    +

    Site built with pkgdown 2.1.1.

    - - + + diff --git a/sitemap.xml b/sitemap.xml index b968901..11e980d 100644 --- a/sitemap.xml +++ b/sitemap.xml @@ -1,57 +1,21 @@ - - - - /404.html - - - /LICENSE-text.html - - - /authors.html - - - /index.html - - - /news/index.html - - - /reference/create_chartcode.html - - - /reference/get_breakpoints.html - - - /reference/get_chartgrp.html - - - /reference/get_refcode.html - - - /reference/get_reference.html - - - /reference/get_seq.html - - - /reference/get_tx.html - - - /reference/get_ty.html - - - /reference/get_viewport.html - - - /reference/get_ynames.html - - - /reference/index.html - - - /reference/parse_chartcode.html - - - /reference/ynames_lookup.html - + +/404.html +/LICENSE-text.html +/authors.html +/index.html +/news/index.html +/reference/create_chartcode.html +/reference/get_breakpoints.html +/reference/get_chartgrp.html +/reference/get_refcode.html +/reference/get_reference.html +/reference/get_seq.html +/reference/get_tx.html +/reference/get_ty.html +/reference/get_viewport.html +/reference/get_ynames.html +/reference/index.html +/reference/parse_chartcode.html +/reference/ynames_lookup.html +