From 81eddcb21176c1350ac4a009e38298a799f298ad Mon Sep 17 00:00:00 2001
From: ryanjameskennedy <ryanjameskennedy@icloud.com>
Date: Wed, 29 Jan 2025 19:14:53 +0100
Subject: [PATCH] Fix sccmec versions file

---
 nextflow-modules/modules/sccmec/main.nf | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nextflow-modules/modules/sccmec/main.nf b/nextflow-modules/modules/sccmec/main.nf
index f87ea6dc..ceb207fd 100644
--- a/nextflow-modules/modules/sccmec/main.nf
+++ b/nextflow-modules/modules/sccmec/main.nf
@@ -20,7 +20,7 @@ process sccmec {
     cat <<-END_VERSIONS > ${sample_id}_${task.process}_versions.yml
     ${task.process}:
      sccmec:
-      version: \$(echo \$(sccmec --version 2>&1) | sed -n 's/.*sccmec_targets, version //p')
+      version: \$(echo \$(sccmec --version 2>&1) | sed -n 's/.*sccmec_targets, version //p' | sed 's/ .*//')
       container: ${task.container}
     END_VERSIONS
     """
@@ -33,7 +33,7 @@ process sccmec {
     cat <<-END_VERSIONS > ${sample_id}_${task.process}_versions.yml
     ${task.process}:
      sccmec:
-      version: \$(echo \$(sccmec --version 2>&1) | sed -n 's/.*sccmec_targets, version //p')
+      version: \$(echo \$(sccmec --version 2>&1) | sed -n 's/.*sccmec_targets, version //p' | sed 's/ .*//')
       container: ${task.container}
     END_VERSIONS
     """