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See if all bacteria from "The approved list of biological agent" are represented in the database. #37

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fwa93 opened this issue Dec 17, 2024 · 3 comments
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fwa93 commented Dec 17, 2024

See if the are represented and add them if they are missing.
Going through emu´s database 3.0.0

@fwa93 fwa93 self-assigned this Dec 17, 2024
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fwa93 commented Jan 2, 2025

These are missing.

Treponema carateum
Treponema pallidum subsp. pertenue

The report had 205 entries e.g. 203 were found.

edit 20250107: Borrelia burgdorferi was there but under Borreliella burgdorferi
Mycobacterium abscessus subsp. abscessus is present under Mycobacteroides abscessus ATCC 19977 (according to ncbi that is the type strain).

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fwa93 commented Jan 7, 2025

Could not find any sequences for Treponema carateum.
Will proceed to try to add Treponema pallidum subs. pertenue

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fwa93 commented Jan 9, 2025

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