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TODO
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# June 2014
Script: support BLASTP?
Writing: tutorial
GUI INSTALL
Help text
#####################################
# Future
Script: support PFAM?
support InterProScan
Others
Theming and language support: because not every community is the same!
Performance improvements: we haven't done any work on improving performance and there are some clear low hanging fruits
* for example, each request makes a new connection to the psql server; there clearly ought to be a single live connection (even with pgbouncer)
Better and more powerful graphs: our graph user-interface can use improvements including more user-interactions.
* including fixing some issues with existing graphs
More data mining: currently only ontology functional annotations are searchable. Some user-interface work can vastly improve user experience by e.g. allowing users to search for genes with particular expression profiles or network memberships.
More data types: we have in-silico annotation, networks and gene expression experiments covered but we still lack phylogenies, wet-lab experiments (e.g. knock-outs) and other functional experiments.
More use-cases: because there is no reason why the Tree of Life can't have a JAMp!