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Issues list

correctReadDepth requires S4Vectors but it is not imported
#6 opened Sep 4, 2017 by lbeltrame updated Sep 4, 2017
Titan reporting very short CNVs
#60 opened Dec 17, 2018 by d-henness updated Dec 19, 2018
1
Using GATK CNV with TITAN
#38 opened Oct 23, 2018 by fpbarthel updated Dec 26, 2018
14
Provide a list of TitanCall abbreviations in an easily-accessible form
#8 opened Sep 5, 2017 by lbeltrame updated Feb 8, 2019
9
Optimize parameters to reduce overestimation of genome doubling enhancement
#61 opened Dec 19, 2018 by gavinha updated Feb 21, 2019
@gavinha
1
About Chromosome Y
#71 opened Apr 11, 2019 by guanghaoli updated Apr 20, 2019
2
Cancer cell fraction
#70 opened Apr 5, 2019 by fpbarthel updated Apr 27, 2019
2
Snakemake workflow makes Titan assume male gender regardless of how config.yaml file is configured. enhancement
#72 opened Apr 30, 2019 by d-henness updated Jul 24, 2019
2
Ratios shifted upwards in CN segment plot
#75 opened Jul 25, 2019 by lbeltrame updated Aug 26, 2019
5
Snakemake workflow query
#80 opened Nov 4, 2019 by GeorgetteTanner updated Dec 19, 2019
1
Non-human chromosome length
#77 opened Sep 4, 2019 by peterpdu updated Dec 19, 2019
1
selectSolution not selecting the best solution
#46 opened Nov 20, 2018 by fpbarthel updated Dec 31, 2019
11
Corrected NEUT call, which seems to be a region of DLOH instead.
#85 opened Jun 10, 2020 by sahilseth updated Jun 10, 2020
1
Normal_contamination_estimate
#64 opened Jan 30, 2019 by udp3f updated Jun 13, 2020
11
plotIdiogram issues - SNPchip R package installation fails
#88 opened Feb 9, 2021 by dsampath31 updated Mar 1, 2021
3
CNV estimation for WES data using TitanCNA
#90 opened Apr 26, 2021 by asaki1986 updated Apr 26, 2021
Empty optimalClusterSolution.txt
#69 opened Mar 21, 2019 by d88020 updated Jul 13, 2021
4
countPysam script returns 0 for all counts
#94 opened Sep 22, 2021 by thek71 updated Sep 22, 2021
Decide on PR's/issues and create a release for dockerization?
#95 opened Jan 28, 2022 by vortexing updated Jan 28, 2022
TITAN for mm10
#96 opened Jan 31, 2022 by bhinderb updated Jan 31, 2022
Show segment be filtered by region width?
#92 opened Jun 18, 2021 by qindan2008 updated Dec 14, 2022
1
LogR and BAF
#98 opened Jun 7, 2023 by tanasa updated Jun 7, 2023
environment configuration
#99 opened Jul 6, 2023 by FWYX updated Jul 6, 2023
where to find ichorCNA.R and pysam version
#100 opened Jul 18, 2023 by ryao-mdanderson updated Jul 18, 2023
An issue related to chrX when running ichorCNA.snakefile thru TitanCNA
#86 opened Jun 26, 2020 by wenching updated Nov 16, 2023
1
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