From e1b2f11999d57f921d8c14627b6889f12e4cbe72 Mon Sep 17 00:00:00 2001
From: Clea Siguret <37694850+clsiguret@users.noreply.github.com>
Date: Thu, 19 Sep 2024 08:49:19 +0200
Subject: [PATCH] Change tool versions in ToolDistillator parameters (#523)

---
 .../genome-assembly/bacterial-genome-assembly/CHANGELOG.md  | 6 ++++++
 .../bacterial-genome-assembly/bacterial_genome_assembly.ga  | 4 ++--
 2 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/workflows/genome-assembly/bacterial-genome-assembly/CHANGELOG.md b/workflows/genome-assembly/bacterial-genome-assembly/CHANGELOG.md
index 93fd2a18b..76ccd6b1b 100644
--- a/workflows/genome-assembly/bacterial-genome-assembly/CHANGELOG.md
+++ b/workflows/genome-assembly/bacterial-genome-assembly/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Changelog
 
+## [1.1.2] 2024-09-19
+
+### Manual update
+
+- Updated the tool versions manually in the ToolDistillator parameters
+
 ## [1.1.1] 2024-07-08
 
 ### Automatic update
diff --git a/workflows/genome-assembly/bacterial-genome-assembly/bacterial_genome_assembly.ga b/workflows/genome-assembly/bacterial-genome-assembly/bacterial_genome_assembly.ga
index f75417bac..f9b1fd302 100644
--- a/workflows/genome-assembly/bacterial-genome-assembly/bacterial_genome_assembly.ga
+++ b/workflows/genome-assembly/bacterial-genome-assembly/bacterial_genome_assembly.ga
@@ -26,7 +26,7 @@
         }
     ],
     "format-version": "0.1",
-    "release": "1.1.1",
+    "release": "1.1.2",
     "license": "GPL-3.0-or-later",
     "name": "Bacterial Genome Assembly using Shovill",
     "steps": {
@@ -630,7 +630,7 @@
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
-            "tool_state": "{\"log\": false, \"tool_section\": {\"tools\": [{\"__index__\": 0, \"select_tool\": {\"tool_list\": \"shovill\", \"__current_case__\": 19, \"input\": {\"__class__\": \"ConnectedValue\"}, \"contig_graph_path\": {\"__class__\": \"ConnectedValue\"}, \"bam_file_path\": {\"__class__\": \"ConnectedValue\"}, \"analysis_software_version\": \"1.1.0\", \"reference_database_version\": null}}, {\"__index__\": 1, \"select_tool\": {\"tool_list\": \"quast\", \"__current_case__\": 16, \"input\": {\"__class__\": \"ConnectedValue\"}, \"quast_html_path\": {\"__class__\": \"ConnectedValue\"}, \"analysis_software_version\": \"5.2.0\", \"reference_database_version\": null}}, {\"__index__\": 2, \"select_tool\": {\"tool_list\": \"refseqmasher\", \"__current_case__\": 18, \"input\": {\"__class__\": \"ConnectedValue\"}, \"analysis_software_version\": \"0.1.2\", \"reference_database_version\": null}}, {\"__index__\": 3, \"select_tool\": {\"tool_list\": \"bandage\", \"__current_case__\": 3, \"input\": {\"__class__\": \"ConnectedValue\"}, \"bandage_plot_path\": {\"__class__\": \"ConnectedValue\"}, \"analysis_software_version\": \"0.8.1\", \"reference_database_version\": null}}]}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_state": "{\"log\": false, \"tool_section\": {\"tools\": [{\"__index__\": 0, \"select_tool\": {\"tool_list\": \"shovill\", \"__current_case__\": 19, \"input\": {\"__class__\": \"ConnectedValue\"}, \"contig_graph_path\": {\"__class__\": \"ConnectedValue\"}, \"bam_file_path\": {\"__class__\": \"ConnectedValue\"}, \"analysis_software_version\": \"1.1.0\", \"reference_database_version\": null}}, {\"__index__\": 1, \"select_tool\": {\"tool_list\": \"quast\", \"__current_case__\": 16, \"input\": {\"__class__\": \"ConnectedValue\"}, \"quast_html_path\": {\"__class__\": \"ConnectedValue\"}, \"analysis_software_version\": \"5.2.0\", \"reference_database_version\": null}}, {\"__index__\": 2, \"select_tool\": {\"tool_list\": \"refseqmasher\", \"__current_case__\": 18, \"input\": {\"__class__\": \"ConnectedValue\"}, \"analysis_software_version\": \"0.1.2\", \"reference_database_version\": null}}, {\"__index__\": 3, \"select_tool\": {\"tool_list\": \"bandage\", \"__current_case__\": 3, \"input\": {\"__class__\": \"ConnectedValue\"}, \"bandage_plot_path\": {\"__class__\": \"ConnectedValue\"}, \"analysis_software_version\": \"2022.09\", \"reference_database_version\": null}}]}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_version": "0.9+galaxy0",
             "type": "tool",
             "uuid": "b6156c8e-5048-41e3-90d9-f9302734c3d1",