diff --git a/workflows/genome_annotation/annotation-helixer/CHANGELOG.md b/workflows/genome_annotation/annotation-helixer/CHANGELOG.md
index b1d9be4de..319e415eb 100644
--- a/workflows/genome_annotation/annotation-helixer/CHANGELOG.md
+++ b/workflows/genome_annotation/annotation-helixer/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+## [0.2] 2025-01-27
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.7.1+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy0`
+
 ## [0.1]
 
 Initial version of the Helixer workflow for genome annotation
\ No newline at end of file
diff --git a/workflows/genome_annotation/annotation-helixer/Galaxy-Workflow-annotation_helixer.ga b/workflows/genome_annotation/annotation-helixer/Galaxy-Workflow-annotation_helixer.ga
index 5fc774a40..1f6b1c7d7 100644
--- a/workflows/genome_annotation/annotation-helixer/Galaxy-Workflow-annotation_helixer.ga
+++ b/workflows/genome_annotation/annotation-helixer/Galaxy-Workflow-annotation_helixer.ga
@@ -110,7 +110,7 @@
     ],
     "format-version": "0.1",
     "license": "MIT",
-    "release": "0.1",
+    "release": "0.2",
     "name": "Genome annotation with Helixer",
     "report": {
         "markdown": "\n# Workflow Execution Report\n\n## Workflow Inputs\n```galaxy\ninvocation_inputs()\n```\n\n## Workflow Outputs\n```galaxy\ninvocation_outputs()\n```\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n"
@@ -125,7 +125,7 @@
             "inputs": [
                 {
                     "description": "Input dataset containing genomic sequences in FASTA format",
-                    "name": "Input"
+                    "name": "Genome sequence"
                 }
             ],
             "label": "Genome sequence",
@@ -195,7 +195,7 @@
         },
         "2": {
             "annotation": "Completeness assessment of the genome using the Busco tool",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.7.1+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy0",
             "errors": null,
             "id": 2,
             "input_connections": {
@@ -204,12 +204,7 @@
                     "output_name": "output"
                 }
             },
-            "inputs": [
-                {
-                    "description": "runtime parameter for tool Busco",
-                    "name": "input"
-                }
-            ],
+            "inputs": [],
             "label": "Busco on genome",
             "name": "Busco",
             "outputs": [
@@ -239,15 +234,15 @@
                 "top": 942.4706486763349
             },
             "post_job_actions": {},
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.7.1+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "2babe6d5c561",
+                "changeset_revision": "e5c372c91e46",
                 "name": "busco",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
-            "tool_state": "{\"adv\": {\"evalue\": \"0.001\", \"limit\": \"3\", \"contig_break\": \"10\"}, \"busco_mode\": {\"mode\": \"geno\", \"__current_case__\": 0, \"use_augustus\": {\"use_augustus_selector\": \"augustus\", \"__current_case__\": 2, \"aug_prediction\": {\"augustus_mode\": \"no\", \"__current_case__\": 0}, \"long\": false}}, \"input\": {\"__class__\": \"RuntimeValue\"}, \"lineage\": {\"lineage_mode\": \"select_lineage\", \"__current_case__\": 1, \"lineage_dataset\": \"mucorales_odb10\"}, \"lineage_conditional\": {\"selector\": \"cached\", \"__current_case__\": 0, \"cached_db\": \"all+2024-03-21-114020\"}, \"outputs\": [\"short_summary\", \"image\", \"gff\", \"missing\"], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "5.7.1+galaxy0",
+            "tool_state": "{\"adv\": {\"evalue\": \"0.001\", \"limit\": \"3\", \"contig_break\": \"10\"}, \"busco_mode\": {\"mode\": \"geno\", \"__current_case__\": 0, \"use_augustus\": {\"use_augustus_selector\": \"augustus\", \"__current_case__\": 2, \"aug_prediction\": {\"augustus_mode\": \"no\", \"__current_case__\": 0}, \"long\": false}}, \"input\": {\"__class__\": \"ConnectedValue\"}, \"lineage\": {\"lineage_mode\": \"select_lineage\", \"__current_case__\": 1, \"lineage_dataset\": \"mucorales_odb10\"}, \"lineage_conditional\": {\"selector\": \"cached\", \"__current_case__\": 0, \"cached_db\": \"all+2024-03-21-114020\"}, \"outputs\": [\"short_summary\", \"image\", \"gff\", \"missing\"], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_version": "5.8.0+galaxy0",
             "type": "tool",
             "uuid": "c0e4cca7-0bc3-4ef2-81b2-c990b1b77d87",
             "when": null,
@@ -456,7 +451,7 @@
         },
         "6": {
             "annotation": "Completeness assessment of the genome using the Busco tool",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.7.1+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy0",
             "errors": null,
             "id": 6,
             "input_connections": {
@@ -465,12 +460,7 @@
                     "output_name": "output_pep"
                 }
             },
-            "inputs": [
-                {
-                    "description": "runtime parameter for tool Busco",
-                    "name": "input"
-                }
-            ],
+            "inputs": [],
             "label": "Busco on protein",
             "name": "Busco",
             "outputs": [
@@ -500,15 +490,15 @@
                 "top": 58.61198039869754
             },
             "post_job_actions": {},
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.7.1+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "2babe6d5c561",
+                "changeset_revision": "e5c372c91e46",
                 "name": "busco",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
-            "tool_state": "{\"adv\": {\"evalue\": \"0.001\", \"limit\": \"3\", \"contig_break\": \"10\"}, \"busco_mode\": {\"mode\": \"prot\", \"__current_case__\": 2}, \"input\": {\"__class__\": \"RuntimeValue\"}, \"lineage\": {\"lineage_mode\": \"select_lineage\", \"__current_case__\": 1, \"lineage_dataset\": \"mucorales_odb10\"}, \"lineage_conditional\": {\"selector\": \"cached\", \"__current_case__\": 0, \"cached_db\": \"all+2024-03-21-114020\"}, \"outputs\": [\"short_summary\", \"image\", \"gff\", \"missing\"], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "5.7.1+galaxy0",
+            "tool_state": "{\"adv\": {\"evalue\": \"0.001\", \"limit\": \"3\", \"contig_break\": \"10\"}, \"busco_mode\": {\"mode\": \"prot\", \"__current_case__\": 2}, \"input\": {\"__class__\": \"ConnectedValue\"}, \"lineage\": {\"lineage_mode\": \"select_lineage\", \"__current_case__\": 1, \"lineage_dataset\": \"mucorales_odb10\"}, \"lineage_conditional\": {\"selector\": \"cached\", \"__current_case__\": 0, \"cached_db\": \"all+2024-03-21-114020\"}, \"outputs\": [\"short_summary\", \"image\", \"gff\", \"missing\"], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_version": "5.8.0+galaxy0",
             "type": "tool",
             "uuid": "51dcc6a4-ff87-4a98-98fa-de00ce54325f",
             "when": null,
@@ -552,10 +542,6 @@
                 }
             },
             "inputs": [
-                {
-                    "description": "runtime parameter for tool OMArk",
-                    "name": "input"
-                },
                 {
                     "description": "runtime parameter for tool OMArk",
                     "name": "input_iso"
@@ -585,7 +571,7 @@
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
-            "tool_state": "{\"database\": \"LUCA-v2.0.0.h5\", \"input\": {\"__class__\": \"RuntimeValue\"}, \"input_iso\": {\"__class__\": \"RuntimeValue\"}, \"omark_mode\": false, \"outputs\": \"detail_sum\", \"r\": null, \"t\": null, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_state": "{\"database\": \"LUCA-v2.0.0.h5\", \"input\": {\"__class__\": \"ConnectedValue\"}, \"input_iso\": {\"__class__\": \"RuntimeValue\"}, \"omark_mode\": false, \"outputs\": \"detail_sum\", \"r\": null, \"t\": null, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_version": "0.3.0+galaxy2",
             "type": "tool",
             "uuid": "75e1dde7-5d60-4092-af57-cd7b065145e2",