2_2_copy_rest.sh

#!/bin/bash
# script for copying rest of data, e.g. metadata, config files, etc. into sourcedata folder

set -e -u -x
module load GCC/12.2.0
module load Anaconda3/2022.05
module load parallel/20230722
source /sw/easybuild_milan/software/Anaconda3/2022.05/bin/activate ~/.conda/envs/babs_28_11

source $PWD/config.sh || {
    echo "Error: Failed to source config file"
    exit 1
}

echo "now proceeding to copy rest of files in dataset (other than subjects)"


cd "$input_dir"
echo "I'm in $PWD"

other="$1"
rsync -Rv --ignore-existing "$other" "$root_dir/$dataset/sourcedata/"

echo "done copying rest of files "