diff --git a/src/ga4gh/vrs/dataproxy.py b/src/ga4gh/vrs/dataproxy.py index 51d70d9d..0fd4d73b 100644 --- a/src/ga4gh/vrs/dataproxy.py +++ b/src/ga4gh/vrs/dataproxy.py @@ -88,6 +88,7 @@ def extract_sequence_type(alias: str) -> str: "refseq:NG_": "g", "refseq:NC_00": "g", "refseq:NW_": "g", + "refseq:NT_": "g", "refseq:NR_": "n", "refseq:NP_": "p", "refseq:XM_": "c", diff --git a/src/ga4gh/vrs/utils/hgvs_tools.py b/src/ga4gh/vrs/utils/hgvs_tools.py index c3192fec..85cee520 100644 --- a/src/ga4gh/vrs/utils/hgvs_tools.py +++ b/src/ga4gh/vrs/utils/hgvs_tools.py @@ -210,7 +210,7 @@ def from_allele(self, vo, namespace=None): if ns.startswith("GRC") and namespace is None: continue - if not (any(accession.startswith(pfx) for pfx in ("NM", "NP", "NC", "NG", "NR", "NW", "XM", "XR", "XP"))): + if not (any(accession.startswith(pfx) for pfx in ("NM", "NP", "NC", "NG", "NR", "NW", "NT", "XM", "XR", "XP"))): continue sequence_type = self.data_proxy.extract_sequence_type(alias)