From 8a94750d19ce9daed7df86e8a5a06bd69a47b4ae Mon Sep 17 00:00:00 2001 From: clintval Date: Wed, 10 Apr 2024 14:23:00 -0700 Subject: [PATCH] Fixup metric docs so they render in Markdown OK --- .../sv/tools/AggregateSvPileupToBedPE.scala | 8 ++------ 1 file changed, 2 insertions(+), 6 deletions(-) diff --git a/src/main/scala/com/fulcrumgenomics/sv/tools/AggregateSvPileupToBedPE.scala b/src/main/scala/com/fulcrumgenomics/sv/tools/AggregateSvPileupToBedPE.scala index 5e5fac7..8b454a3 100644 --- a/src/main/scala/com/fulcrumgenomics/sv/tools/AggregateSvPileupToBedPE.scala +++ b/src/main/scala/com/fulcrumgenomics/sv/tools/AggregateSvPileupToBedPE.scala @@ -38,13 +38,9 @@ object AggregateSvPileupToBedPE { /** The IGV-supported BEDPE file extension. */ val BedPEExtension: String = ".bedpe" - /** A simple BEDPE record as defined by `bedtools`: + /** A simple BEDPE record as defined by [`bedtools`](https://bedtools.readthedocs.io/en/latest/content/general-usage.html#bedpe-format). * - * - https://bedtools.readthedocs.io/en/latest/content/general-usage.html#bedpe-format) - * - * Future compatibility could be implemented for supporting 10x flavored BEDPE files: - * - * - https://github.com/igvteam/igv/wiki/BedPE-Support + * Future compatibility could be implemented for supporting [10x flavored BEDPE files](https://github.com/igvteam/igv/wiki/BedPE-Support). * * Note that the field `score` is allowed to be a string per bedtools! *