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Upper sequence length limit in ESM Search #444
agiani99
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ESM Metagenomic Atlas
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The colabfold notebook supports longer sequences up to 900 residues, but that is out of distribution wrt training data. |
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Hi all,
I am wondering how could it cost to bring the actual sequence search upper limit from 400 to 2500 (upper limit fo AF2).
I am asking this because in several RNA viral sequences, the primary L-Protein (direct RNA transcript) can be as high as 4-5K residues.
This is one of the most relevant problem we are facing in the field: no prediction possible so far.
I attached a sample virus L-Protein sequence example for Crimean-Congo hemorrhagic fever virus CCHFV_L_all3945.fasta
Best
Andrea
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